CuGenDBv2

Gene ID	IVF0002664
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	chr12:19755526..19755711
RNA-Seq Expression	IVF0002664
Synteny	IVF0002664
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEX65163.1 F0F1 ATP synthase subunit delta, partial [Blossfeldia liliputana]

3.24e-20

80.36

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQPQA+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

KAA0053988.1 ATP synthase CF0 C subunit [Cucumis melo var. makuwa]

2.85e-25

100

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG
        MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG

TYH57927.1 hypothetical protein ES332_D08G121300v1 [Gossypium tomentosum]

2.61e-20

80.36

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIST SVI  GL I LASIGPG+G+GTAAGQAVEGI RQP AK KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

VDD24681.1 unnamed protein product, partial [Brassica rapa]

3.53e-20

69.7

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS-----NFNNL
        MNPL+S ASVI  GL + LASIGPG+G+GTAAGQAVEGI RQP+A+ KI+GTLLLS     +FNNL
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS-----NFNNL

YP_009437896.1 ATP synthase CF0 subunit III [Tibetia liangshanensis]

3.24e-20

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A++KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

TrEMBL top hits

e value

%identity

Alignment

A0A3P6DME3 ATP-synt_C domain-containing protein (Fragment)

2.9e-14

69.7

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS-----NFNNL
        MNPL+S ASVI  GL + LASIGPG+G+GTAAGQAVEGI RQP+A+ KI+GTLLLS     +FNNL
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS-----NFNNL

A0A4P8F4N7 ATP synthase F0 sector subunit C

3.8e-14

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A++KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

A0A5A7UG27 ATP synthase CF0 C subunit (Plastid)

9.6e-18

100

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG
        MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQG

A0A5D2JSX1 ATP synthase F0 sector subunit C

2.9e-14

80.36

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIST SVI  GL I LASIGPG+G+GTAAGQAVEGI RQP AK KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

A0A7T8ZSE8 AtpH

3.8e-14

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A++KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

SwissProt top hits

e value

%identity

Alignment

A8SE66 ATP synthase subunit c, chloroplastic

3.0e-16

76.79

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS+ASVI  GL + LASIGPG+G+GTAAGQAVEGI RQP+A+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

B1VKH8 ATP synthase subunit c, chloroplastic

3.0e-16

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

B5LMM9 ATP synthase subunit c, chloroplastic

1.7e-16

76.79

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNP+IS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A++KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

P62481 ATP synthase subunit c, chloroplastic

3.0e-16

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

Q6WQW2 ATP synthase subunit c, chloroplastic

3.0e-16

78.57

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPLIS ASVI  GL + LASIGPGIG+GTAAGQAVEGI RQP+A+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

3.6e-17

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Query:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS
        MNPL+S ASVI  GL + LASIGPG+G+GTAAGQAVEGI RQP+A+ KI+GTLLLS
Subjt:  MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLS

Sequences

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CDS sequence

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ATGAATCCACTGATTTCTACTGCTTCCGTTATTGTTCCTGGGTTGGGCATCAGACTTGCTTCTATTGGACCTGGGATTGGTCGAGGTACTGCTGCAGGCCAAGCTGTAGA
AGGGATCGTGAGACAACCTCAGGCAAAGGAAAAAATCCAAGGTACTTTATTGCTTAGTAACTTTAACAATTTATGA

mRNA sequence

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ATGAATCCACTGATTTCTACTGCTTCCGTTATTGTTCCTGGGTTGGGCATCAGACTTGCTTCTATTGGACCTGGGATTGGTCGAGGTACTGCTGCAGGCCAAGCTGTAGA
AGGGATCGTGAGACAACCTCAGGCAAAGGAAAAAATCCAAGGTACTTTATTGCTTAGTAACTTTAACAATTTATGA

Protein sequence

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MNPLISTASVIVPGLGIRLASIGPGIGRGTAAGQAVEGIVRQPQAKEKIQGTLLLSNFNNL

IVF0002664 (gene) of Melon (IVF77) v1 genome