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IVF0002749 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002749
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:14839616..14840041
RNA-Seq ExpressionIVF0002749
SyntenyIVF0002749
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-5166.2Show/hide
Query:  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELS
        MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MALKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS
Subjt:  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELS

Query:  NLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        +LDR LCQR LM  +DDM  FV+MT++ER+NFCRV LRD SR
Subjt:  NLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]1.23e-6273.05Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA++C NDQL+ I EW ARALAN+THV QE +RLL  M EL++
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDR LCQRHL+S MDDM GF+QM +DERQNFCRVLL D SR
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]4.88e-94100Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

TYK01823.1 retrotransposon protein [Cucumis melo var. makuwa]7.45e-5262.41Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M DGNE+FS +YSQGID+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  E++ IH+AL   N+QL++IVEW A  LAN+ HV  EF R+LREM EL++
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDRAL QRHL+S MDD+ GFV M  DER+ FCRVLLRD  R
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

TYK30971.1 retrotransposon protein [Cucumis melo var. makuwa]1.51e-5161.7Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M DGNE+FSS+YSQG+D+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  +++ IH+AL   N+QL++I EW AR LAN+ HV  EF R+LREM EL++
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDRAL QRHL+S MDD+ GFV M  DER+ FCRVLLRD  R
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein1.4e-4873.05Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA++C NDQL+ I EW ARALAN+THV QE +RLL  M EL++
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDR LCQRHL+S MDDM GF+QM +DERQNFCRVLL D SR
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

A0A5A7U9D5 Retrotransposon protein3.1e-72100Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

A0A5A7V026 Retrotransposon protein1.1e-4065.25Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M + NEEF S+YSQGID+SQEDV AS+ +  S  R  SS+ KRKRGSQ++ EIKVIHM L+C NDQLK I EW A  LAN+ HVHQEF  +L EM EL+ 
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDR+L QRHL+SHM DM GF QM NDER +FCRV+LRD SR
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

A0A5D3BQI7 Retrotransposon protein1.3e-4166.2Show/hide
Query:  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELS
        MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MALKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS
Subjt:  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELS

Query:  NLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        +LDR LCQR LM  +DDM  FV+MT++ER+NFCRV LRD SR
Subjt:  NLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

A0A5D3E5U2 Retrotransposon protein7.1e-4061.7Show/hide
Query:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN
        M DGNE+FSS+YSQG+D+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  +++ IH+AL   N+QL++I EW AR LAN+ HV  EF R+LREM EL++
Subjt:  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSN

Query:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
        LDRAL QRHL+S MDD+ GFV M  DER+ FCRVLLRD  R
Subjt:  LDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAG
ATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGC
ATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTG
ATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAG
ATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGC
ATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTG
ATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG
Protein sequenceShow/hide protein sequence
MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHL
MSHMDDMWGFVQMTNDERQNFCRVLLRDFSR