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IVF0002783 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002783
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein LTV1-like protein
Genome locationchr01:1769570..1769953
RNA-Seq ExpressionIVF0002783
SyntenyIVF0002783
Gene Ontology termsGO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0042274 - ribosomal small subunit biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33900.1 hypothetical protein [Cucumis melo subsp. melo]4.87e-1752.78Show/hide
Query:  MFEERFNLFGRMRTHIY-----------PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV---
        MFEE FN F R  TH +           PNS FADAS+DYDEEENGGFGSSMQSRGEVGG  S   +                +I CIFGRLRIL+V   
Subjt:  MFEERFNLFGRMRTHIY-----------PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV---

Query:  --RTPRLS
          RTPR S
Subjt:  --RTPRLS

KAA0063639.1 translation initiation factor eIF-2B subunit epsilon isoform X1 [Cucumis melo var. makuwa]9.88e-1358.75Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV-----RTPRLS
        PNS FA AS+DYDEEENGGFGSSMQSRGEVGGT S   +                +I CIFGRLRIL+V     RTPR S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV-----RTPRLS

TYJ99459.1 protein LTV1-like protein [Cucumis melo var. makuwa]3.06e-1259.46Show/hide
Query:  YPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSS-------LTM------VTIICCIFGRLRILVVRTPRL
        YPNSTFADAS +YDEE NGGF S MQSRGEVGGT S        L +        I+CCIFGRLRIL   T R+
Subjt:  YPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSS-------LTM------VTIICCIFGRLRILVVRTPRL

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]5.59e-1194.29Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS
        PNS FADASEDYDEEENGGFGSSMQSRGEVGGT S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]6.05e-0985.71Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS
        PNS FADASEDYDEEENGGFGSSMQ  G+VGGT S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS

TrEMBL top hitse value%identityAlignment
A0A1S3BKZ8 protein LTV1 homolog2.3e-0894.29Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS
        PNS FADASEDYDEEENGGFGSSMQSRGEVGGT S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS

A0A5A7VDS3 eIF-2B GDP-GTP exchange factor subunit epsilon4.2e-1058.75Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV-----RTPRLS
        PNS FA AS+DYDEEENGGFGSSMQSRGEVGGT S   +                +I CIFGRLRIL+V     RTPR S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV-----RTPRLS

A0A5D3BKI3 Protein LTV1-like protein8.0e-0958.11Show/hide
Query:  YPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLT-------------MVTIICCIFGRLRILVVRTPRL
        YPNSTFADAS +YD EENGGF S MQSRGEVGGT S                   I+CCIFGRLRIL   T R+
Subjt:  YPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLT-------------MVTIICCIFGRLRILVVRTPRL

A0A5D3CI19 Protein LTV1-like protein2.3e-0894.29Show/hide
Query:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS
        PNS FADASEDYDEEENGGFGSSMQSRGEVGGT S
Subjt:  PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFS

E5GBQ8 Uncharacterized protein2.6e-1252.78Show/hide
Query:  MFEERFNLFGRMRTHIY-----------PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV---
        MFEE FN F   RTH +           PNS FADAS+DYDEEENGGFGSSMQSRGEVGG  S   +                +I CIFGRLRIL+V   
Subjt:  MFEERFNLFGRMRTHIY-----------PNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVT--------------IICCIFGRLRILVV---

Query:  --RTPRLS
          RTPR S
Subjt:  --RTPRLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGAACGTTTCAACTTATTTGGCAGAATGCGCACACACATATATCCTAACTCAACATTTGCCGATGCTTCTGAGGATTACGATGAGGAAGAGAATGGGGGTTT
TGGGTCATCTATGCAGTCTCGTGGGGAAGTTGGTGGAACCTTTAGTTCCCTGACGATGGTTACAATTATTTGCTGCATCTTCGGGAGATTAAGAATACTGGTGGTGAGAA
CCCCTAGGCTAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGGAACGTTTCAACTTATTTGGCAGAATGCGCACACACATATATCCTAACTCAACATTTGCCGATGCTTCTGAGGATTACGATGAGGAAGAGAATGGGGGTTT
TGGGTCATCTATGCAGTCTCGTGGGGAAGTTGGTGGAACCTTTAGTTCCCTGACGATGGTTACAATTATTTGCTGCATCTTCGGGAGATTAAGAATACTGGTGGTGAGAA
CCCCTAGGCTAAGCTGA
Protein sequenceShow/hide protein sequence
MFEERFNLFGRMRTHIYPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTFSSLTMVTIICCIFGRLRILVVRTPRLS