; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002792 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002792
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationchr01:32687582..32690924
RNA-Seq ExpressionIVF0002792
SyntenyIVF0002792
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059439.1 protein WHI4 [Cucumis melo var. makuwa]2.35e-18096.56Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_004141677.1 protein WHI4 [Cucumis sativus]1.31e-17795.42Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPA+AISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_008462363.2 PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo]2.26e-17895.8Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKK  ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]3.02e-16789.31Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK +QSNEAVV P + +SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]1.52e-17694.27Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKA+QS EA+VTPA+A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein1.0e-13795.42Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPA+AISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A1S3CHB2 LOW QUALITY PROTEIN: protein WHI42.7e-13895.8Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKK  ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI48.5e-14096.56Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI41.8e-12988.93Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK +QSNEAVV P + +SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 26.7e-12988.93Show/hide
Query:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH  YDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARS   +     GGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK +QSNEAVV P + +SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a5.0e-1238.71Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS
        ++ + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS

Q93062 RNA-binding protein with multiple splicing2.5e-1137.63Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS
        N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F +   A  A +ALNG++FDP+    L +E A++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS

Q9W6I1 RNA-binding protein with multiple splicing 21.4e-1141.98Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS

Q9WVB0 RNA-binding protein with multiple splicing2.5e-1137.63Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS
        N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F +   A  A +ALNG++FDP+    L +E A++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS

Q9YGP5 RNA-binding protein with multiple splicing 23.8e-1243.21Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARS

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.1e-3837.87Show/hide
Query:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG
        LA+S               KR +TD          S  T+++ G      P   +   N    +PA        A  AP          PC TLFIAN+G
Subjt:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG

Query:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGG-MHIEYARSKM
        PNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G  + ++YARS+M
Subjt:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.6e-3637.69Show/hide
Query:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG
        LA+S               KR +TD          S  T+++ G      P   +   N    +PA        A  AP          PC TLFIAN+G
Subjt:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG

Query:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRG
        PNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G
Subjt:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-3637.36Show/hide
Query:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG
        LA+S               KR +TD          S  T+++ G      P   +   N    +PA        A  AP          PC TLFIAN+G
Subjt:  LARSTQGENISGGAYVVIDKRKKTD--------ANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPAS-------AISAPYEHHEKNDGGPCSTLFIANLG

Query:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK
        PNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G +    +R  MRK
Subjt:  PNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.1e-7454.27Show/hide
Query:  HHPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        H PYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HHPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDE---------PSKKAQQSNEAVVTPASAIS
        H+ A+ A++ LNGVKFDPQ+GS LHIELARS   + E    G YVVID R K  + SQ+  SD+G S+PDE         P +     +EA   P S   
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDE---------PSKKAQQSNEAVVTPASAIS

Query:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIE
        +   H EK ++GG     CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQG++L SSDRGGMHIE
Subjt:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.0e-8259.01Show/hide
Query:  HHPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        H PYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HHPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDE---------PSKKAQQSNEAVVTPASAISAPYEHHEK-NDGG----P
        Q+GS LHIELARS   + E    G YVVID R K  + SQ+  SD+G S+PDE         P +     +EA   P S   +   H EK ++GG     
Subjt:  QSGSVLHIELARST--QGENISGGAYVVIDKRKKTDANSQETSSDDGGSEPDE---------PSKKAQQSNEAVVTPASAISAPYEHHEK-NDGG----P

Query:  CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCATCCTTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTATTCATCTCTGGTCTCCCTGACGACGT
CAAGGCGCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGGTTCGACTCTTGCCAGCTCAAGTACACTGGACGAGGCAATCAGGTTGTGGCATTTGCCACTTTTTACA
ATCACCAATCGGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCGGTTCTGCATATTGAACTTGCTAGGTCAACTCAAGGAGAAAAC
ATAAGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACCGATGCCAATTCTCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAA
GGCCCAACAAAGCAACGAGGCAGTGGTTACTCCTGCTAGTGCTATATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCAA
ATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCCGTTGCATTTGCT
GATTTTGAGGACATCGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGCAGTGTTCTACCATCATCCGACCGTGGCGGCATGCATATAGAGTATGCTCGGTCTAAAAT
GAGGAAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACCATCCTTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTATTCATCTCTGGTCTCCCTGACGACGT
CAAGGCGCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGGTTCGACTCTTGCCAGCTCAAGTACACTGGACGAGGCAATCAGGTTGTGGCATTTGCCACTTTTTACA
ATCACCAATCGGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCGGTTCTGCATATTGAACTTGCTAGGTCAACTCAAGGAGAAAAC
ATAAGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACCGATGCCAATTCTCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAA
GGCCCAACAAAGCAACGAGGCAGTGGTTACTCCTGCTAGTGCTATATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCAA
ATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCCGTTGCATTTGCT
GATTTTGAGGACATCGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGCAGTGTTCTACCATCATCCGACCGTGGCGGCATGCATATAGAGTATGCTCGGTCTAAAAT
GAGGAAGTCTTAG
Protein sequenceShow/hide protein sequence
MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSTQGEN
ISGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFA
DFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS