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IVF0002842 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002842
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:12315114..12315702
RNA-Seq ExpressionIVF0002842
SyntenyIVF0002842
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.09e-3576.19Show/hide
Query:  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKS
        PD  S GIGREA+ LEGEL  DPK SKRWPMLP S ERSSG RNHWK TCS+GNGLSSRT   RP+KTR GMP+TQFSRP VKS
Subjt:  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKS

KAA0035524.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]5.06e-3264.65Show/hide
Query:  TLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPR
        TL+TST TP + PDT SQGIG++AS LEGE   DPK SK WPMLP   +RSSGV+NHWK TC + N LSSRT  VRP+KTR  MP+TQFSRP V+   R
Subjt:  TLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPR

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]6.05e-3966.97Show/hide
Query:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF
        L +   +  ARTLRTSTHT G+ P   +QGIGREAS LEGEL FDPK  KRWPML  S ER SGVRNHWK TCS  N LSSRT  V P KTR  M +TQF
Subjt:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF

Query:  SRPRVKSDP
        SRPR KSDP
Subjt:  SRPRVKSDP

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]7.79e-3575.58Show/hide
Query:  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRV
        PG+ PDT S GIGREAS LEGEL  DPK SKRWP LP S ERSSGVRNHWK TCS+GNGLSSRT   RP+KT  GMP+TQFSRP V
Subjt:  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRV

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]5.56e-3260.53Show/hide
Query:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF
        L +  L+ GA T RTSTHT  + PD  SQGIGREAS LEGEL  DPK  KRWPML  S E SSGVRN+WK TCS+ N L SRT +V P+KT   MPQTQF
Subjt:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF

Query:  SRPRVKSDPRRFLP
         RPR  +     LP
Subjt:  SRPRVKSDPRRFLP

TrEMBL top hitse value%identityAlignment
A0A5A7SLK2 Retrovirus-related Pol polyprotein from transposon 17.62.2e-2776.19Show/hide
Query:  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKS
        PD  S GIGREA+ LEGEL  DPK SKRWPMLP S ERSSG RNHWK TCS+GNGLSSRT   RP+KTR GMP+TQFSRP VKS
Subjt:  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKS

A0A5A7V368 Uncharacterized protein2.1e-3066.97Show/hide
Query:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF
        L +   +  ARTLRTSTHT G+ P   +QGIGREAS LEGEL FDPK  KRWPML  S ER SGVRNHWK TCS  N LSSRT  V P KTR  M +TQF
Subjt:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF

Query:  SRPRVKSDP
        SRPR KSDP
Subjt:  SRPRVKSDP

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 401.0e-2775.58Show/hide
Query:  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRV
        PG+ PDT S GIGREAS LEGEL  DPK SKRWP LP S ERSSGVRNHWK TCS+GNGLSSRT   RP+KT  GMP+TQFSRP V
Subjt:  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRV

A0A5D3DFP2 Uncharacterized protein8.4e-2758.47Show/hide
Query:  SERECLKVIFLVIG----------------------ARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTC
        SEREC ++ FLV+G                        T RTSTHT G+ PDT S GIGREAS LEGEL+ DPK SKRWPMLP   ERSSG RNHWK TC
Subjt:  SERECLKVIFLVIG----------------------ARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTC

Query:  SKGNGLSSRTFDVRPQKT
        S+GNGLSSRT   RP+KT
Subjt:  SKGNGLSSRTFDVRPQKT

A0A5D3DIF8 Gag/pol protein6.5e-2760.53Show/hide
Query:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF
        L +  L+ GA T RTSTHT  + PD  SQGIGREAS LEGEL  DPK  KRWPML  S E SSGVRN+WK TCS+ N L SRT +V P+KT   MPQTQF
Subjt:  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQF

Query:  SRPRVKSDPRRFLP
         RPR  +     LP
Subjt:  SRPRVKSDPRRFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTATGCACGAGGAGATCCGGTGTACATCCCAAGAAAATCTGAGAGAGAATGCCTCAAAGTCATTTT
TCTCGTCATAGGGGCTCGTACTCTGAGGACCTCAACCCACACTCCTGGCATACCCCCTGACACAATTTCTCAAGGTATAGGTCGGGAAGCGAGTTGGTTGGAGGGAGAAC
TAATGTTCGACCCAAAATTGTCCAAAAGATGGCCAATGCTTCCAAGGAGTAGCGAACGCTCCTCCGGTGTCAGAAACCACTGGAAATCAACGTGTAGCAAAGGAAATGGG
TTGAGCTCGAGGACTTTCGATGTTCGTCCCCAGAAAACACGAGTGGGAATGCCCCAAACTCAGTTTTCTCGTCCTAGGGTAAAAAGCGATCCTCGACGGTTTCTTCCCTT
TGCTTCATATTGGTCACAAGTCATTCGATCTTCGAGACTCGTACTCCTAGGACTTCAACCCACACTCCTGAAATGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTATGCACGAGGAGATCCGGTGTACATCCCAAGAAAATCTGAGAGAGAATGCCTCAAAGTCATTTT
TCTCGTCATAGGGGCTCGTACTCTGAGGACCTCAACCCACACTCCTGGCATACCCCCTGACACAATTTCTCAAGGTATAGGTCGGGAAGCGAGTTGGTTGGAGGGAGAAC
TAATGTTCGACCCAAAATTGTCCAAAAGATGGCCAATGCTTCCAAGGAGTAGCGAACGCTCCTCCGGTGTCAGAAACCACTGGAAATCAACGTGTAGCAAAGGAAATGGG
TTGAGCTCGAGGACTTTCGATGTTCGTCCCCAGAAAACACGAGTGGGAATGCCCCAAACTCAGTTTTCTCGTCCTAGGGTAAAAAGCGATCCTCGACGGTTTCTTCCCTT
TGCTTCATATTGGTCACAAGTCATTCGATCTTCGAGACTCGTACTCCTAGGACTTCAACCCACACTCCTGAAATGCTCCTAG
Protein sequenceShow/hide protein sequence
MSETTGNALAAKETGYARGDPVYIPRKSERECLKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNG
LSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPRRFLPFASYWSQVIRSSRLVLLGLQPTLLKCS