; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002882 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002882
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein RADIALIS-like 4
Genome locationchr03:25574427..25576078
RNA-Seq ExpressionIVF0002882
SyntenyIVF0002882
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]2.74e-61100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]1.88e-6597.03Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]5.60e-67100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]1.38e-5887.13Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]5.19e-6395.05Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+V NGS+Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein2.3e-4897.03Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 41.6e-49100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VC75 Protein RADIALIS-like 43.1e-45100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR

A0A6J1HFA3 protein RADIALIS-like 43.7e-4387.13Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 43.7e-4387.13Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.7e-2457.28Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 65.2e-2661.7Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL

Q58FS3 Transcription factor RADIALIS6.0e-2254.26Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ
        S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+IL++D+ +IESGKVP PNY+     G+M  DE+R  +NLK++
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 51.5e-2560.58Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKN
        MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK V     +  + D + RLMKN
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

Q9SIJ5 Protein RADIALIS-like 28.4e-2456.73Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2660.58Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKN
        MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK V     +  + D + RLMKN
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

AT1G75250.1 RAD-like 67.8e-2561.45Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDD
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N    +D
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDD

AT1G75250.2 RAD-like 63.7e-2761.7Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein5.9e-2556.73Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

AT4G39250.1 RAD-like 11.2e-2557.28Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTACGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCGTTGTTCCCAACGGTTCAATGTATGATGATGAACAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
TATCATCACCTTGAGTATATAAGAAGCACTCAGAGCCCACATTTTCACACCATACCTTGACTTGGTCCTCGTCTTAAACGAGATCCTTAAGTCTCTTTCTTACCATTATT
TCTTTGGCTTTCCTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACAAACCATATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATAAT
GGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATA
GATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTACGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCT
CTTCCTAACTACAAGCCCGTTGTTCCCAACGGTTCAATGTATGATGATGAACAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGGTGTTATACCAACGATAGA
ATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGCTGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCCTTTCTACCATATATTGCTAAACTA
TTGTAACCTGTG
Protein sequenceShow/hide protein sequence
MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ