CuGenDBv2

Gene ID	IVF0002931
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr10:6555085..6555714
RNA-Seq Expression	IVF0002931
Synteny	IVF0002931
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050358.1 uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa]

1.99e-146

100

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Query:  EESMIKKKR
        EESMIKKKR
Subjt:  EESMIKKKR

KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]

7.87e-111

83.57

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAG    +LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CTTEK KVSEKDPT+EQLKNL TWTETDFI KNLILNGLTDELYDYYSTMTTAK+V
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        W+A QKKYDTEE GSKKYAV+ YLRYQ+T+DRSVEAQSHEIQKIAHEII+EGMPLDDQFQV +IIDKL  LWKDFKNTLRHKTK FSLE+L TRLRIE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Query:  EESMIKK
         +   KK
Subjt:  EESMIKK

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]

4.37e-122

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAGQ QS LMS DLN  FRFEGAHFKRWKQK+LFFLTLKKVAT CTTEK KVSEKDPTEEQLKNLATWTETDFI KNLILNGLTDELYDYYSTMTTAKEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDA QKKYDTEE GSKKYAV+ YLRYQ+T+D+SVEAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLP LWKDFKNTLRHKTK FSLESLITRLRIE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]

6.91e-115

88.5

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        M GQ QS LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CTTEKLKVSEKDP EEQLKNLATWTETDFI KNLILNGLTDELYDYYSTMTT KEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDA QKKYDT+E  SKKYAV+ YLRYQ+T+D+SVE QSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLP LWKDFKNTLRHKTK FSLESLITRL+IE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]

1.72e-112

83.65

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAG    +LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CT EK KVSEKDPT+EQLKNL TWTETDFI KNLILNGLTDELYDYYSTMTTAK+V
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        W+A QKKYDTEE GSKKYAV+ YLRYQ+T+DRSVEAQSHEIQKIAHEII+EGMPLDDQFQV +IIDKLP LWKDFKNTLRHKTK FSLE+LITRL+IE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Query:  EESMIKKK
         +   KKK
Subjt:  EESMIKKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UA92 Uncharacterized protein

4.6e-88

84.58

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Query:  YLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKK
        +LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CTTEK KVSEKDPT+EQLKNL TWTETDFI KNLILNGLTDELYDYYSTMTTAK+VW+A QKK
Subjt:  YLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKK

Query:  YDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVEEESMIKK
        YDTEE GSKKYAV+ YLRYQ+T+DRSVEAQSHEIQKIAHEII+EGMPLDDQFQV +IIDKL  LWKDFKNTLRHKTK FSLE+L TRLRIE E +   KK
Subjt:  YDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVEEESMIKK

Query:  K
        +
Subjt:  K

A0A5A7UYY4 Uncharacterized protein

3.7e-93

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAGQ QS LMS DLN  FRFEGAHFKRWKQK+LFFLTLKKVAT CTTEK KVSEKDPTEEQLKNLATWTETDFI KNLILNGLTDELYDYYSTMTTAKEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDA QKKYDTEE GSKKYAV+ YLRYQ+T+D+SVEAQSHEIQKIAHEIISEGMPLDDQFQV VIIDKLP LWKDFKNTLRHKTK FSLESLITRLRIE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

A0A5D3BDS3 Uncharacterized protein

2.5e-89

85.07

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Query:  YLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKK
        +LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CT EK KVSEKDPT+EQLKNL TWTETDFI KNLILNGLTDELYDYYSTMTTAK+VW+A QKK
Subjt:  YLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKK

Query:  YDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVEEESMIKK
        YDTEE GSKKYAV+ YLRYQ+T+DRSVEAQSHEIQKIAHEII+EGMPLDDQFQV +IIDKLP LWKDFKNTLRHKTK FSLE+LITRL+IE E +   KK
Subjt:  YDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVEEESMIKK

Query:  K
        K
Subjt:  K

A0A5D3BV12 Uncharacterized protein

2.1e-112

100

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Query:  EESMIKKKR
        EESMIKKKR
Subjt:  EESMIKKKR

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein

2.4e-92

86.06

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Query:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV
        M GQ QS LMS DLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CTTEKLKVSEKDP EEQLKNLATWTETDFI KNLILNGLTDELYDYYSTMTT KEV
Subjt:  MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEV

Query:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        WDA QKKYDT+E  SKKYAV+ YLRYQ+T+D+SVE QSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLP LWKDFKNTLRHKTK FSLESLITRL+IE E
Subjt:  WDAQQKKYDTEETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Query:  EESMIKKK
             KK+
Subjt:  EESMIKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

1.5e-14

27.89

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Query:  RFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLA-------TWTETDFIYKNLILNGLTDELYDYYS-TMTTAKEVWDAQQKKYDT
        RF+G  +  W  +M  FL   K+    +     +      E   + +         W   D++    ++N L+D LY  YS     AKE+WD  +  Y  
Subjt:  RFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLA-------TWTETDFIYKNLILNGLTDELYDYYS-TMTTAKEVWDAQQKKYDT

Query:  EETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE
        +E+ SK+  V  Y+ +++  +R +  Q     KIA  I+S GM LD+ F V+ II K P  W+ F   L  + +   +  L+ R++ E E
Subjt:  EETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVE

Sequences

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CDS sequence

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ATGGCTGGACAATTTCAATCTTATTTGATGTCTTTTGATCTCAACTGTCCATTTCGATTTGAAGGAGCACATTTCAAAAGATGGAAACAAAAGATGTTGTTTTTCCTCAC
GCTGAAGAAAGTGGCTACTACTTGCACTACTGAAAAGCTGAAGGTTTCAGAAAAAGATCCTACAGAAGAACAACTAAAGAACCTCGCTACCTGGACAGAAACCGACTTCA
TCTATAAGAACTTAATTCTTAATGGTCTTACTGATGAACTATATGACTATTACAGTACCATGACTACTGCAAAAGAAGTGTGGGATGCGCAGCAAAAGAAGTATGATACT
GAGGAAACGGGGTCGAAGAAGTACGCTGTCAACCCATATCTGAGATATCAAATTACTAATGACAGATCCGTGGAAGCACAGTCACATGAAATCCAGAAAATAGCCCACGA
GATTATCAGTGAAGGTATGCCACTCGATGATCAATTTCAAGTTGCTGTTATTATTGATAAATTACCTTCACTATGGAAGGATTTCAAAAACACTCTAAGGCACAAAACCA
AGGTGTTCTCACTAGAAAGTCTAATCACGAGGCTAAGGATAGAGGTGGAAGAAGAAAGCATGATAAAAAAGAAGAGGTGA

mRNA sequence

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Protein sequence

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MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKKYDT
EETGSKKYAVNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSLESLITRLRIEVEEESMIKKKR

IVF0002931 (gene) of Melon (IVF77) v1 genome