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IVF0002940 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002940
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:11320958..11321669
RNA-Seq ExpressionIVF0002940
SyntenyIVF0002940
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]1.94e-3343.95Show/hide
Query:  MCCN----------REDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHL-LTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFN
        MCC+          RED H   HL   VAVERI  FIFS +LQ R SS SSS +CCSQ+++H H  L CV AK + IFIFSHV               F 
Subjt:  MCCN----------REDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHL-LTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFN

Query:  TIAA--------------ERTIIFIFKVLLQRGSSSSAIC-CSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRH
           +              ER IIFIF    QR SSSS+   CS++ H LHL C AA+ +I+F+F+                Q R SSSSS M RSR+   
Subjt:  TIAA--------------ERTIIFIFKVLLQRGSSSSAIC-CSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRH

Query:  LHLQCGAAETIVIFIFNVVQQRR
        LHL CGAAET+++FIF+  QQRR
Subjt:  LHLQCGAAETIVIFIFNVVQQRR

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]1.28e-4251.33Show/hide
Query:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIF------------------IFLFNTI
        MCC+RED HL  HLFT VA+ERII  IFSHVLQ + SSS SSH+ CS+++HH HL TCV  + +IIFIFSHV+                    + L   I
Subjt:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIF------------------IFLFNTI

Query:  IIIFIFNTIAAERTIIFIFKVLLQ-RGSSS--SAICCSQEDHHLHL-QCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSS-MWRSRNDRHLHL
                 A ER I F F  +LQ RGSSS  S ICC QEDHHLHL  CVA K+IIIF+F+             ++ Q RGSSSSSS M  SR D HLHL
Subjt:  IIIFIFNTIAAERTIIFIFKVLLQ-RGSSS--SAICCSQEDHHLHL-QCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSS-MWRSRNDRHLHL

Query:  -QCGAAETIVIFIFNVVQQRRSSSSS
          C A E I+IFIF+ V Q R SSSS
Subjt:  -QCGAAETIVIFIFNVVQQRRSSSSS

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]9.31e-5050.67Show/hide
Query:  MCCNREDFHLH----------LHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIF--IFSHVII--------------
        +CC+RE+ HLH          LHLFT VAVERII FIFSH+LQSRESS SSS++C SQE HH +LLTCV  + + IF  IFSH +               
Subjt:  MCCNREDFHLH----------LHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIF--IFSHVII--------------

Query:  ---FIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVAAKKIIIFV-FNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSR
            + L           ++AAER  IF   +  +  SSSS++CCSQEDHHL LQC    +  + +       ERII +F+FN+ Q + SSSSSSMWRSR
Subjt:  ---FIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVAAKKIIIFV-FNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSR

Query:  NDRHLHLQCGAAETIVIFIFNVV
        NDRHLHLQCGAAETI+IFI NV+
Subjt:  NDRHLHLQCGAAETIVIFIFNVV

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.75e-3350.75Show/hide
Query:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQ--
        +RII FIFSHVLQ R SSSSSSHICCS+E+HH HLLTCV A+  IIFIFSHV+ F    ++   I      + E   + +F       SSSS +CCSQ  
Subjt:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQ--

Query:  -------EDHHLHL-QCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGS-SSSSSMWRSRNDRHLH---LQCGAAETIVIFIF---NVVQQRRSSSSS
               EDHHLHL  C AAK+IIIF+FN              + Q RGS SSSS ++ SR D HLH   L C +AE I+IFIF   +V+Q R SSSSS
Subjt:  -------EDHHLHL-QCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGS-SSSSSMWRSRNDRHLH---LQCGAAETIVIFIF---NVVQQRRSSSSS

TYK26477.1 hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa]1.16e-9487.91Show/hide
Query:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKS---VIIFIFSHV----IIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSA
        ERIITFIFSHVLQSRESSSSSSHICCS+ENHHFHLLTCVTAK+   + IFIF+ +    IIFIFLFNTIIIIFIFNTIA ERTIIFIFKVLLQRGSSSSA
Subjt:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKS---VIIFIFSHV----IIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSA

Query:  ICCSQEDHH--LHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV
        ICCSQEDHH  LHLQCVAAKKIIIFVFNVVA ERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI+I I NV+
Subjt:  ICCSQEDHH--LHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein9.8e-2747Show/hide
Query:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHL-LTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAA-ERTII
        +C   E     LH    VAVERI  FIFS +LQ R SS SSS +CCSQ+++H H  L CV AK + IFIFSHV  F    ++     + + I   ER II
Subjt:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHL-LTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAA-ERTII

Query:  FIFKVLLQRGSSSSA-ICCSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVVQQRR
        FIF    QR SSSS+ + CS++ H LHL C AA+ +I+F+F+                Q R SSSSS M RSR+   LHL CGAAET+++FIF+  QQRR
Subjt:  FIFKVLLQRGSSSSA-ICCSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVVQQRR

A0A5A7TBX4 Uncharacterized protein1.5e-3553Show/hide
Query:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVI---------IFIFLFNTIIIIFIFNTI
        MCC+RED   HLHLFT VA+ERII  IFSHVLQ + SSS SSH+ CS+++HH HL TCV  + +IIFIFSHV+           +        + +   I
Subjt:  MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVI---------IFIFLFNTIIIIFIFNTI

Query:  AAERTIIFIFKVLLQ-RGSS--SSAICCSQEDHHLH-LQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSS-MWRSRNDRHLH-LQCGAAETI
        A ER I F F  +LQ RGSS  SS ICC QEDHHLH L CVA K+IIIF+F+             ++ Q RGSSSSSS M  SR D HLH L C A E I
Subjt:  AAERTIIFIFKVLLQ-RGSS--SSAICCSQEDHHLH-LQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSS-MWRSRNDRHLH-LQCGAAETI

Query:  VIFIFNVVQQRRSSSSS
        +IFIF+ V Q R SSSS
Subjt:  VIFIFNVVQQRRSSSSS

A0A5A7U1J1 Uncharacterized protein2.0e-4052.58Show/hide
Query:  MCCNREDFHL----------HLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVII--FIFSHVIIFIFLFNTIIII---
        +CC+RE+ HL          HLHLFT VAVERII FIFSH+LQSRESS SSS++C SQE HH +LLTCV  + + I  FIFSH +     ++++  +   
Subjt:  MCCNREDFHL----------HLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVII--FIFSHVIIFIFLFNTIIII---

Query:  ----FIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVA-AKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCG
                ++AAER  IF   +  +  SSSS++CCSQEDHHL LQC    +  +         ERII +F+FN+ Q + SSSSSSMWRSRNDRHLHLQCG
Subjt:  ----FIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVA-AKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCG

Query:  AAETIVIFIFNVV
        AAETI+IFI NV+
Subjt:  AAETIVIFIFNVV

A0A5D3BVC5 Retrotransposon gag protein4.0e-2848.39Show/hide
Query:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICC----
        +RII FIFSHVLQ R SSSSSSHICCS+E+HH HLLTCV A+  IIFIFSHV+ F    ++   I      + E   + +F       SSSS +CC    
Subjt:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICC----

Query:  -----SQEDHHLH-LQCVAAKKIIIFVFN------------------------------VVAMERIIFIFVF-NMTQPRGSSSSSS---MWRSRNDRHLH
             SQEDHHLH L C AAK+IIIF+FN                              V A + IIFIF+F ++ QPRGSSSSSS   M  SR D HLH
Subjt:  -----SQEDHHLH-LQCVAAKKIIIFVFN------------------------------VVAMERIIFIFVF-NMTQPRGSSSSSS---MWRSRNDRHLH

Query:  ---LQCGAAETIVIFIF
           L C AAE I+IFIF
Subjt:  ---LQCGAAETIVIFIF

A0A5D3DRX7 Uncharacterized protein1.3e-7487.91Show/hide
Query:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAK---SVIIFIFSHV----IIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSA
        ERIITFIFSHVLQSRESSSSSSHICCS+ENHHFHLLTCVTAK   ++ IFIF+ +    IIFIFLFNTIIIIFIFNTIA ERTIIFIFKVLLQRGSSSSA
Subjt:  ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAK---SVIIFIFSHV----IIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSA

Query:  ICCSQED--HHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV
        ICCSQED  HHLHLQCVAAKKIIIFVFNVVA ERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI+I I NV+
Subjt:  ICCSQED--HHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCAATCGAGAGGATTTTCATCTTCATCTTCATCTTTTCACATATGTTGCAGTCGAGAGGATCATCACCTTCATCTTTTCACATGTGTTGCAGTCGAGAGAATC
ATCATCTTCATCTTCTCACATATGTTGCAGTCAAGAGAATCATCATTTTCATCTTCTAACATGTGTTACAGCCAAGAGTGTCATCATCTTTATCTTCTCACATGTGATCA
TCTTCATTTTCCTCTTTAATACGATCATAATCATCTTCATCTTCAATACGATTGCAGCCGAGAGGACCATCATCTTCATCTTCAAAGTGTTGCTGCAGAGAGGATCTTCA
TCTTCTGCCATATGTTGCAGCCAAGAGGATCATCATCTTCATCTTCAATGTGTTGCAGCCAAGAAGATCATCATCTTCGTCTTCAATGTTGTCGCAATGGAGAGGATCAT
CTTCATCTTCGTCTTCAACATGACACAACCGAGAGGATCATCCTCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGCGCAGCAGAAA
CGATCGTCATCTTCATCTTCAATGTGGTGCAGCAGAGACGATCATCATCTTCATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCAATCGAGAGGATTTTCATCTTCATCTTCATCTTTTCACATATGTTGCAGTCGAGAGGATCATCACCTTCATCTTTTCACATGTGTTGCAGTCGAGAGAATC
ATCATCTTCATCTTCTCACATATGTTGCAGTCAAGAGAATCATCATTTTCATCTTCTAACATGTGTTACAGCCAAGAGTGTCATCATCTTTATCTTCTCACATGTGATCA
TCTTCATTTTCCTCTTTAATACGATCATAATCATCTTCATCTTCAATACGATTGCAGCCGAGAGGACCATCATCTTCATCTTCAAAGTGTTGCTGCAGAGAGGATCTTCA
TCTTCTGCCATATGTTGCAGCCAAGAGGATCATCATCTTCATCTTCAATGTGTTGCAGCCAAGAAGATCATCATCTTCGTCTTCAATGTTGTCGCAATGGAGAGGATCAT
CTTCATCTTCGTCTTCAACATGACACAACCGAGAGGATCATCCTCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGCGCAGCAGAAA
CGATCGTCATCTTCATCTTCAATGTGGTGCAGCAGAGACGATCATCATCTTCATCTTAA
Protein sequenceShow/hide protein sequence
MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSS
SSAICCSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVVQQRRSSSSS