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IVF0002941 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002941
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAP complex subunit sigma
Genome locationchr12:13808047..13808886
RNA-Seq ExpressionIVF0002941
SyntenyIVF0002941
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR000804 - Clathrin adaptor complex, small chain
IPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058373.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa]7.30e-4692.77Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDSRLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

TYK30832.1 AP-3 complex subunit sigma-like [Cucumis melo var. makuwa]1.88e-67100Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI
        MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI

Query:  MEMLQGI
        MEMLQGI
Subjt:  MEMLQGI

XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]2.02e-4592.77Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDSRLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

XP_008464326.1 PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]2.07e-5796.91Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSR
        MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF   R
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSR

XP_023003840.1 AP-3 complex subunit sigma-like [Cucurbita maxima]2.30e-4386.75Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNT+GKP+FAKFYDFQPIEKQ ELIR+VY VLCSRAEN+SNFVEA+SIFG DSRLVYKHFATLYF+ VFNSSEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

TrEMBL top hitse value%identityAlignment
A0A0A0KRY4 AP complex subunit sigma5.2e-4386.92Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI
        MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAEN+SNFVE +SIFG DS LVYKHFATLYF+LVFNSSEN+LAMLDLIQ TSNIL DGFVTS LLI
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI

Query:  MEMLQGI
        ME+LQGI
Subjt:  MEMLQGI

A0A1S3BT37 AP complex subunit sigma1.2e-3492.77Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDSRLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

A0A1S3CL75 AP-3 complex subunit sigma-like4.7e-44100Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF
        MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF

A0A5A7UR76 AP-3 complex subunit sigma1.2e-3492.77Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDSRLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

A0A5D3E4J0 AP complex subunit sigma4.0e-51100Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI
        MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLI

Query:  MEMLQGI
        MEMLQGI
Subjt:  MEMLQGI

SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-27.5e-1545.78Show/hide
Query:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Subjt:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

Q1JQA3 AP-3 complex subunit sigma-27.5e-1545.78Show/hide
Query:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Subjt:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

Q5RDP9 AP-3 complex subunit sigma-27.5e-1545.78Show/hide
Query:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Subjt:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

Q8BSZ2 AP-3 complex subunit sigma-27.5e-1545.78Show/hide
Query:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Subjt:  NTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

Q8VZ37 AP-3 complex subunit sigma1.3e-3074.7Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E +S+FG DSRLVYKH+ATLYF+LVF+ SEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

Arabidopsis top hitse value%identityAlignment
AT2G17380.1 associated protein 195.0e-0626.97Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL
        ++ +GK +  K+Y     +++ ++IR +  V+ +R   + NF+E +       ++VYK +A+LYF +  + ++N+L +L++I     IL
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL

AT2G19790.1 SNARE-like superfamily protein1.5e-0526.83Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLI
        +N +G+ + A++Y++  +E+++ L   + R   +R +   +FVE ++      ++VY+ +A+L+F++  +  EN+LA+L+ I
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLI

AT3G50860.1 Clathrin adaptor complex small chain family protein9.1e-3274.7Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ
        MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E +S+FG DSRLVYKH+ATLYF+LVF+ SEN+LAMLDLIQ
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQ

AT4G35410.1 Clathrin adaptor complex small chain family protein5.0e-0628.09Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL
        ++ +GK +  K+Y     +++ ++IR +  V+ +R   + NFVE +       ++VYK +A+LYF +  +  +N+L +L++I     IL
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL

AT4G35410.2 Clathrin adaptor complex small chain family protein5.0e-0628.09Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL
        ++ +GK +  K+Y     +++ ++IR +  V+ +R   + NFVE +       ++VYK +A+LYF +  +  +N+L +L++I     IL
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAACGTCTATAGAGTACTTTGCAGTCGAGCTGA
GAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGA
ATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAACGTCTATAGAGTACTTTGCAGTCGAGCTGA
GAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGA
ATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA
Protein sequenceShow/hide protein sequence
MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI