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IVF0002977 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002977
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationtig00001902:40899..41909
RNA-Seq ExpressionIVF0002977
SyntenyIVF0002977
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]1.52e-2653.44Show/hide
Query:  FLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKE--------KV
        FL+LLF  + LHACDA  L+   SS    R+EP  IS G  T+  Q ++S  ++ S+ V   +   VGIE+LKGMKK   RL MELP+++        KV
Subjt:  FLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKE--------KV

Query:  MNSKENEVGEDMVVMDYAQPHRKPPIHNERP
        +NS+ENEVGEDMVVMDYAQPHRKPPIHN++P
Subjt:  MNSKENEVGEDMVVMDYAQPHRKPPIHNERP

XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]3.03e-6480.77Show/hide
Query:  MAMPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRI-EPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVM
        MAMP FFL LLFF STLHACDASRLRFFQSSNFVSRI E HS+SQGIW+ +   + SF KNN+D +L +KE I+GIEMLKGMK+DGSRLVME PMKEKVM
Subjt:  MAMPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRI-EPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP
        NSKENEVGEDMVVMDYAQPHRKPPIHNE+P
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]2.16e-2653.62Show/hide
Query:  MAMPC-FFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKE---
        M MP  FFL LLF  + LHACDA  L+   SS    R+E   IS G  T+  Q +RS  ++ S+ V   +   VGIE+LKGMKK   RL MELP+++   
Subjt:  MAMPC-FFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKE---

Query:  -----KVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP
             KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN++P
Subjt:  -----KVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]7.90e-5979.69Show/hide
Query:  MPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLK-GMKKDGSRLVMELPMKEKVMNS
        MP  FL LL F STLHAC+A  LRFF+SS+FVSRIEPHSISQGIW D  Q +RSF ++NSDK L +KEIIVGIEMLK GMKK GSRLVME PMKEKV+NS
Subjt:  MPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLK-GMKKDGSRLVMELPMKEKVMNS

Query:  KENEVGEDMVVMDYAQPHRKPPIHNERP
        KENEVGEDMVVMDYAQPHRKPPIHNE+P
Subjt:  KENEVGEDMVVMDYAQPHRKPPIHNERP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]1.14e-6080.31Show/hide
Query:  MPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVMNSK
        MP  FL LL F STLHAC+A  LRFF+SS+FVSRIEPHSISQGIW D  Q +RSF ++NSDK L +KEIIVGIEMLKGMKK GSRLVME PMKEKV+NSK
Subjt:  MPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVMNSK

Query:  ENEVGEDMVVMDYAQPHRKPPIHNERP
        ENEVGEDMVVMDYAQPHRKPPIHNE+P
Subjt:  ENEVGEDMVVMDYAQPHRKPPIHNERP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein5.8e-4980.77Show/hide
Query:  MAMPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRI-EPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVM
        MAMP FFL LLFF STLHACDASRLRFFQSSNFVSRI E HS+SQGIW+ +   + SF KNN+D +L +KE I+GIEMLKGMK+DGSRLVME PMKEKVM
Subjt:  MAMPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRI-EPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP
        NSKENEVGEDMVVMDYAQPHRKPPIHNE+P
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP

A0A2J6MHI4 Uncharacterized protein6.1e-0633.85Show/hide
Query:  LHACDASRLRFFQS---------SNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLK-GMKKDG----SRLVMELPM---KEKVM
        +HACD+  L  F           ++    I   +  +     + +D+ S ++  S+++  HK   + +++ + G K  G    +RL ME      KEK+ 
Subjt:  LHACDASRLRFFQS---------SNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLK-GMKKDG----SRLVMELPM---KEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP
        NSK++ V ED+ VMDYAQPHRKPPIHN +P
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNERP

A0A2Z7BRF9 Uncharacterized protein6.1e-0633.33Show/hide
Query:  CFFLTLLFFLSTLHACDASRLR---FFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSD--------KVLPHKEIIVGIEMLKGMKKDGSRLVMELP
        C   TL+   S L     +R+         NF++ +    IS G  T   ++QR+     +D        K+L  ++I+      K  K+ G    +E P
Subjt:  CFFLTLLFFLSTLHACDASRLR---FFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSD--------KVLPHKEIIVGIEMLKGMKKDGSRLVMELP

Query:  MK--EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP
            E+  N K+N V ED+VVMDY QPHRKPPIHN  P
Subjt:  MK--EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP

A0A6J1DKL1 uncharacterized protein LOC1110213969.7e-2057.89Show/hide
Query:  MAMPCFFLTLLFFLSTLHACDA-SRLRFFQSSNFVSRIEPHS-ISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPM--KE
        MA P     LL  LSTLHACDA  RL+ F+ SN VSR+   + I Q   T  DQ +RS  KN   KV    EI  GI +LKGMKK   RL ME  M  KE
Subjt:  MAMPCFFLTLLFFLSTLHACDA-SRLRFFQSSNFVSRIEPHS-ISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPM--KE

Query:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP
        K+M+ +ENEVGEDMVVMDYAQPHRKPPIHN++P
Subjt:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP

A0A6J1KZM9 uncharacterized protein LOC1114985213.7e-1952.86Show/hide
Query:  MAMP-CFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMK----
        M MP   FL LLF  + LHACDA  L+   S    SR+E   IS G     DQ +RS  K+ S++V   +   VGIE+LKGMKK   RL MELP++    
Subjt:  MAMP-CFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMK----

Query:  ------EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP
              +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN +P
Subjt:  ------EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNERP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.5e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNER
        E GE++VVMDY QPHRKPPIHNE+
Subjt:  EVGEDMVVMDYAQPHRKPPIHNER

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.0e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNER
        E GE++VVMDY QPHRKPPIHNE+
Subjt:  EVGEDMVVMDYAQPHRKPPIHNER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGCCTTGTTTCTTTCTCACTCTTTTATTCTTCTTATCTACGTTGCATGCGTGTGACGCTAGTCGTCTTCGATTCTTCCAGAGCTCGAATTTTGTTTCCAGGAT
TGAACCGCATTCGATCTCTCAAGGGATTTGGACAGATCATGATCAGGATCAGAGAAGTTTTTACAAAAACAACAGTGACAAGGTTCTTCCTCATAAGGAGATTATTGTTG
GGATTGAAATGTTAAAGGGAATGAAGAAGGATGGAAGCAGATTGGTAATGGAACTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATG
GTAGTGATGGATTATGCACAACCCCATAGAAAGCCTCCTATTCACAATGAAAGACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATGCCTTGTTTCTTTCTCACTCTTTTATTCTTCTTATCTACGTTGCATGCGTGTGACGCTAGTCGTCTTCGATTCTTCCAGAGCTCGAATTTTGTTTCCAGGAT
TGAACCGCATTCGATCTCTCAAGGGATTTGGACAGATCATGATCAGGATCAGAGAAGTTTTTACAAAAACAACAGTGACAAGGTTCTTCCTCATAAGGAGATTATTGTTG
GGATTGAAATGTTAAAGGGAATGAAGAAGGATGGAAGCAGATTGGTAATGGAACTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATG
GTAGTGATGGATTATGCACAACCCCATAGAAAGCCTCCTATTCACAATGAAAGACCCTAG
Protein sequenceShow/hide protein sequence
MAMPCFFLTLLFFLSTLHACDASRLRFFQSSNFVSRIEPHSISQGIWTDHDQDQRSFYKNNSDKVLPHKEIIVGIEMLKGMKKDGSRLVMELPMKEKVMNSKENEVGEDM
VVMDYAQPHRKPPIHNERP