CuGenDBv2

Gene ID	IVF0002994
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr04:29460617..29460943
RNA-Seq Expression	IVF0002994
Synteny	IVF0002994
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.44e-58

94.23

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKIRAILVQHKVAKILDE RLP+NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

TYK04234.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.86e-58

90.38

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+ DFALWRK IR ILVQHKVAKILDEERLP+NIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLE+LYLTKSLPNK+
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        Y+ E
Subjt:  YIGE

TYK05815.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.67e-57

94.23

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFA+WRKKIRAILVQHKVAKILDE RLP+NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.50e-65

99.04

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.41e-58

99.04

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-47

95.19

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNG+GDFALWRKKIR ILVQHKVAKILDEERLP+NITESEKRDMDEMAYSTILLYLSDEVLRLVD+ATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.1e-48

98.08

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

A0A5A7UB25 Putative gag-pol polyprotein

5.4e-48

97.12

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDF+LWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

A0A5D3CQJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-49

99.04

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

A0A5D3DNU1 Putative gag-pol polyprotein

1.7e-49

99.04

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

Query:  YIGE
        YI E
Subjt:  YIGE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.9e-06

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI
        M   +  +  F+G   +A+W+ +IRA+L +  V K++D   +P+ + +S K+  +  A STI+ YLSD  L       T  ++ + L+++Y  KSL +++
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-17

40.37

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Query:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN
        M+  ++EV+KFNG   F+ W++++R +L+Q  + K+LD + + PD +   +  D+DE A S I L+LSD+V+  ++DE T  G +W +LESLY++K+L N
Subjt:  MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPN

Query:  KIYIGEVLW
        K+Y+ + L+
Subjt:  KIYIGEVLW

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTTCTACACGATTTGAAGTGTCCAAGTTTAATGGACATGGAGATTTTGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTT
AGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAG
TGGATGAGGCTACTACTACAGGAGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAGGAGAAGTTCTTTGGATATAA

mRNA sequence

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Protein sequence

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MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGEVLWI

IVF0002994 (gene) of Melon (IVF77) v1 genome