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IVF0003012 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003012
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr10:14900970..14901224
RNA-Seq ExpressionIVF0003012
SyntenyIVF0003012
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]5.31e-3881.71Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE+GHWLRNCPKYLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]2.51e-3882.93Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNED HWL+NC KYLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]2.94e-50100Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
        MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]2.33e-3779.76Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
        M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNEDGHWLRNCPKYL EKKA+KEAQ N
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]6.52e-3982.93Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNEDGHWLRNCP+YLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein7.5e-2981.71Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE+GHWLRNCPKYLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

A0A5A7TUI5 Gag/pol protein9.7e-2982.93Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNED HWL+NC KYLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

A0A5A7TXW7 Gag/pol protein7.9e-39100Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
        MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN

A0A5D3BYQ2 Gag/pol protein1.7e-2879.76Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
        M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNEDGHWLRNCPKYL EKKA+KEAQ N
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN

A0A5D3E1U5 Gag/pol protein1.5e-2982.93Show/hide
Query:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNEDGHWLRNCP+YLAEKKAEKEAQ
Subjt:  MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAG
AAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAG
AAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG
Protein sequenceShow/hide protein sequence
MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN