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IVF0003027 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003027
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr05:12987617..12987814
RNA-Seq ExpressionIVF0003027
SyntenyIVF0003027
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026294.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa]1.98e-1061.36Show/hide
Query:  ERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER
        ++ S KD+ N  KE FGD+L+L +ITSI CVPKGEQVW++G ER
Subjt:  ERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER

KAA0032002.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.74e-1356.9Show/hide
Query:  LLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY
        L+ER S KD+DN  +E FGD LH G+ITSI C P+  QVW  G ERL  L  K Y FY
Subjt:  LLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY

KAA0062632.1 uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa]4.62e-0763.89Show/hide
Query:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERL
        N  KE F +KLHLG+ TSI C PKG QVW  G+ERL
Subjt:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERL

TYK07860.1 uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa]2.00e-1966.15Show/hide
Query:  MASACHQLLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY
        MA AC QLLERV+ KD+ NT KE F   LH+ EITSITCVPKGEQVW+   ERL  LK K YK Y
Subjt:  MASACHQLLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY

TYK21449.1 hypothetical protein E5676_scaffold609G001190 [Cucumis melo var. makuwa]8.09e-0779.31Show/hide
Query:  NTHKENFGDKLHLGEITSITCVPKGEQVW
        N +KE FGDKLHLG ITSI CV KGEQVW
Subjt:  NTHKENFGDKLHLGEITSITCVPKGEQVW

TrEMBL top hitse value%identityAlignment
A0A5A7V332 Uncharacterized protein9.9e-0563.89Show/hide
Query:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERL
        N  KE F +KLHLG+ TSI C PKG QVW  G+ERL
Subjt:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERL

A0A5D3BHD0 LINE-1 reverse transcriptase isogeny2.9e-0462.86Show/hide
Query:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER
        N  KE F +KLHLG+ TSI C PKG QVW  G+ER
Subjt:  NTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER

A0A5D3C951 Uncharacterized protein6.2e-1566.15Show/hide
Query:  MASACHQLLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY
        MA AC QLLERV+ KD+ NT KE F   LH+ EITSITCVPKGEQVW+   ERL  LK K YK Y
Subjt:  MASACHQLLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY

A0A5D3CY29 Transposon Ty3-I Gag-Pol polyprotein2.3e-0956.9Show/hide
Query:  LLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY
        L+ER S KD+DN  +E FGD LH G+ITSI C P+  QVW  G ERL  L  K Y FY
Subjt:  LLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY

A0A5D3DDG5 Cytochrome b561 and DOMON domain-containing protein9.6e-0861.36Show/hide
Query:  ERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER
        ++ S KD+ N  KE FGD+L+L +ITSI CVPKGEQVW++G ER
Subjt:  ERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGTGCTTGTCACCAACTGCTCGAGAGAGTAAGTGGTAAAGACATAGATAACACGCACAAGGAGAATTTTGGAGACAAACTTCACCTTGGCGAGATAACTTCCAT
CACTTGTGTCCCGAAAGGAGAACAAGTGTGGATATTTGGCATCGAGAGATTGTCATCCTTAAAAGCGAAGTGCTATAAGTTTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGTGCTTGTCACCAACTGCTCGAGAGAGTAAGTGGTAAAGACATAGATAACACGCACAAGGAGAATTTTGGAGACAAACTTCACCTTGGCGAGATAACTTCCAT
CACTTGTGTCCCGAAAGGAGAACAAGTGTGGATATTTGGCATCGAGAGATTGTCATCCTTAAAAGCGAAGTGCTATAAGTTTTATTAG
Protein sequenceShow/hide protein sequence
MASACHQLLERVSGKDIDNTHKENFGDKLHLGEITSITCVPKGEQVWIFGIERLSSLKAKCYKFY