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IVF0003063 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003063
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase
Genome locationchr04:19986267..19987142
RNA-Seq ExpressionIVF0003063
SyntenyIVF0003063
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN64612.1 hypothetical protein VITISV_030849 [Vitis vinifera]7.27e-1247.3Show/hide
Query:  MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTM
        M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP ++  S+ FNI DLT+
Subjt:  MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTM

KAA0039087.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa]4.41e-3368Show/hide
Query:  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD
        L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D            FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Subjt:  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD

KAF7151872.1 hypothetical protein RHSIM_Rhsim02G0058400 [Rhododendron simsii]4.89e-1344.44Show/hide
Query:  YKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLDFGMKSDHA
        Y+K F        F  +    +G+Y+KLKPRK GPYE+L KIG  AYV+DLP S+  S  FN++DL+ YH  +   +  HA
Subjt:  YKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLDFGMKSDHA

KGN61529.1 hypothetical protein Csa_006553 [Cucumis sativus]2.48e-2353.51Show/hide
Query:  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDAN
        AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +LTMYH  D            F  KSD A+S + NI+ KDAN
Subjt:  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDAN

Query:  QTDLLPVAMLNKED
         T+LLPVAML +ED
Subjt:  QTDLLPVAMLNKED

PKU64118.1 hypothetical protein MA16_Dca008024 [Dendrobium catenatum]2.90e-1264.71Show/hide
Query:  GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD
        G+YSKL P+KIGP+ IL KI  NAY++DLP SI TSSTFN+SD+  YH  D
Subjt:  GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD

TrEMBL top hitse value%identityAlignment
A0A0A0LKH8 Uncharacterized protein1.8e-1753.51Show/hide
Query:  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDAN
        AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +LTMYH  D            F  KSD A+S + NI+ KDAN
Subjt:  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDAN

Query:  QTDLLPVAMLNKED
         T+LLPVAML +ED
Subjt:  QTDLLPVAMLNKED

A0A2I0VL32 Integrase catalytic domain-containing protein6.2e-1046.43Show/hide
Query:  LPYKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD
        L YK+  + +   + F P  + +L         G+YSKL P+KIGP+ IL KI  NAY++DLP SI TSSTFN+SD+  YH  D
Subjt:  LPYKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD

A0A2I0VWB5 RNA-directed DNA polymerase1.1e-0948.78Show/hide
Query:  YKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD
        YK+  +A    K F P  + +L         G+YSKL PRKIGP+ IL KI  NAYV+DLP  I TSSTFN++D+  YH  D
Subjt:  YKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD

A0A5D3CWR3 Uncharacterized protein1.2e-2468Show/hide
Query:  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD
        L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D            FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Subjt:  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD

A5AJG1 Chromo domain-containing protein6.2e-1047.3Show/hide
Query:  MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTM
        M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP ++  S+ FNI DLT+
Subjt:  MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACG
AAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTA
TGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTG
AACAAAGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACG
AAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTA
TGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTG
AACAAAGAAGATGATTGA
Protein sequenceShow/hide protein sequence
MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLDFGMKSDHADSLIRNIVRKDANQTDLLPVAML
NKEDD