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IVF0003103 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003103
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr02:10207215..10207469
RNA-Seq ExpressionIVF0003103
SyntenyIVF0003103
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038365.1 gag/pol protein [Cucumis melo var. makuwa]1.90e-53100Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

KAA0051354.1 gag/pol protein [Cucumis melo var. makuwa]7.97e-4488.1Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKT+VGTLNMKKKR   TP NSEGKKVAKGKC HCNE+ HWLRNC KYLAEKKAEK AQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

TYJ97030.1 gag/pol protein [Cucumis melo var. makuwa]7.74e-5398.81Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYL EKKAEKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]8.07e-4385.71Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVE N  TTEKELVGGSSSKT+VGTLNMKKKR  KTP NSEGKKVAKGKCYHCNE+GHWLRNC KYL EKKA+KEAQ N
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

TYK16526.1 gag/pol protein [Cucumis melo var. makuwa]1.80e-4486.9Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEAN ATTEKELVGGSS KT+ GTLNMKKKR  KTP NSEGKKVAKGKCYHCNE+G+WLRNCLKYLA KK EKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

TrEMBL top hitse value%identityAlignment
A0A5A7TAG4 Gag/pol protein4.7e-39100Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

A0A5A7U7R6 Gag/pol protein1.2e-3188.1Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKT+VGTLNMKKKR   TP NSEGKKVAKGKC HCNE+ HWLRNC KYLAEKKAEK AQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

A0A5D3BB14 Gag/pol protein1.4e-3898.81Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYL EKKAEKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

A0A5D3BYQ2 Gag/pol protein1.2e-3185.71Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVE N  TTEKELVGGSSSKT+VGTLNMKKKR  KTP NSEGKKVAKGKCYHCNE+GHWLRNC KYL EKKA+KEAQ N
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

A0A5D3D1G4 Gag/pol protein7.2e-3286.9Show/hide
Query:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN
        MGKGKEVEAN ATTEKELVGGSS KT+ GTLNMKKKR  KTP NSEGKKVAKGKCYHCNE+G+WLRNCLKYLA KK EKEAQGN
Subjt:  MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGGAAAGGAAGTGGAAGCAAATTTTGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAAAGTTGGAACTTTAAATATGAAGAAGAAGAG
AAATAGGAAGACTCCCAATAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTATCATTGCAATGAGAATGGGCATTGGTTGAGAAATTGCCTGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGGGAAAGGAAGTGGAAGCAAATTTTGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAAAGTTGGAACTTTAAATATGAAGAAGAAGAG
AAATAGGAAGACTCCCAATAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTATCATTGCAATGAGAATGGGCATTGGTTGAGAAATTGCCTGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MGKGKEVEANFATTEKELVGGSSSKTKVGTLNMKKKRNRKTPNNSEGKKVAKGKCYHCNENGHWLRNCLKYLAEKKAEKEAQGN