CuGenDBv2

Gene ID	IVF0003107
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Genome location	chr05:3493945..3497639
RNA-Seq Expression	IVF0003107
Synteny	IVF0003107
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR001509 - NAD-dependent epimerase/dehydratase IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140080.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis sativus]

2.44e-232

86.31

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSS--SSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGF
        MAALPFSSSLFSSKPSIYFPS ISPSF   SLSPISNSSPISSSFSISHSNFLSNYSS  SSSSFRPSTV SFSVRASSS KKKVLIVNTNSGGHAVIGF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSS--SSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGF

Query:  YFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK
        YFAK+LLGSGHEVTILTVGEQSSDKMNKPPFNRFS       +   GDPAEIGKV+EGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK
Subjt:  YFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK

Query:  PTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI
         TDEPPH   D VKADAGHVGVEKY+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI
Subjt:  PTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKIL
        FNCV+ RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGW+ TTNLPEDLKERFEEY           FELDDKIL
Subjt:  FNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKIL

Query:  ESLKVPVAA
        ESL VPVAA
Subjt:  ESLKVPVAA

XP_008449375.1 PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis melo]

3.99e-249

90.91

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
        MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF

Query:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS       +   GDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
        DEPPH   DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
Subjt:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN

Query:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES
        CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY           FELDDKILES
Subjt:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES

Query:  LKVPVAA
        LKVPVAA
Subjt:  LKVPVAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

3.32e-210

79.66

Show/hide

Query:  MAALPFSSS-LFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY
        MAAL  SSS LF+SKPSI+ PS +SP     SLSPIS+SS ++SSF+ISHS FL   SSS    R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFY
Subjt:  MAALPFSSS-LFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY

Query:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRFSW----WRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP
        FAK+LLGSGHEVTILTVGE+SSDKM KPPFNRFS       +   GDPAE+GKV+ GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKP
Subjt:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRFSW----WRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP

Query:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
        TDEPPH   D VKADAGHVGVE+Y+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIF
Subjt:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF

Query:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE
        NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGWKS+TNLPEDLKERFEEY           FELDDKILE
Subjt:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

XP_038887630.1 LOW QUALITY PROTEIN: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

1.03e-208

79.61

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
        MAAL  SSSLFSSKPSI+ PS +SPSF PLSLSPIS+ SP+SSS SISHS FLS  SS    FRPS VCSFSVRA+S   KKVLIVNTNSGGHAVIGFYF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF

Query:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AK+LLGSGHEVTILTVGE+SSDKM KPPFNRFS       +   GDPAEIGKV+ GASFDVVLDNNGKDIDTVRPVIDWAK  GVKQFLFISSAGIYKPT
Subjt:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
        DEPPH   D VK +AGHVGVEKY+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIV++R +PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
Subjt:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN

Query:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES
        CV+DRAVTLDGMAKLCAQAAG  V+IVH+DPKAVG            HF+AEPRAAQ+ILGWKSTTNLPEDLKERFEEY           FELDDKILES
Subjt:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES

Query:  LKVPVAA
        LKVPVAA
Subjt:  LKVPVAA

XP_038888331.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

1.07e-217

81.57

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
        MAAL  SSSLFSSKPSI+ PS +SPSF  LSLSPIS+ SP+SSS SISHS FLS  S     FRPS VCSFSVRA+S  KKKVLIVNTNSGGHAVIGFYF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF

Query:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AK+LLGSGHEVTILTVGE+SSDKM KPPFNRFS       +   GDPAEIGKV+ GASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRFS----WWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
        DEPPH   DLVKADAGHVGVEKY+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVR+RP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
Subjt:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN

Query:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES
        CV+DRAVTLDGMAKLCAQAAGRPV+IVH+DPKAVG            HFYAEPRAAQ+ILGWK TTNLPEDLKERFEEY           FELDDKILES
Subjt:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES

Query:  LKVPVAA
        LKVPVAA
Subjt:  LKVPVAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE82 Epimerase domain-containing protein

3.3e-185

86.31

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYS--SSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGF
        MAALPFSSSLFSSKPSIYFPS ISPSF   SLSPISNSSPISSSFSISHSNFLSNYS  SSSSSFRPSTV SFSVRASSS KKKVLIVNTNSGGHAVIGF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYS--SSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGF

Query:  YFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK
        YFAK+LLGSGHEVTILTVGEQSSDKMNKPPFNRF    S   +   GDPAEIGKV+EGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK
Subjt:  YFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYK

Query:  PTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI
         TDEPPH   D VKADAGHVGVEKY+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI
Subjt:  PTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNI

Query:  FNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKIL
        FNCV+ RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGW+ TTNLPEDLKERFEEY           FELDDKIL
Subjt:  FNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKIL

Query:  ESLKVPVAA
        ESL VPVAA
Subjt:  ESLKVPVAA

A0A1S3BLW3 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

5.8e-198

90.91

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
        MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF

Query:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF    S   +   GDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
        DEPPH   DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
Subjt:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN

Query:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES
        CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY           FELDDKILES
Subjt:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES

Query:  LKVPVAA
        LKVPVAA
Subjt:  LKVPVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

5.8e-198

90.91

Show/hide

Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
        MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYF

Query:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF    S   +   GDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
        DEPPH   DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN
Subjt:  DEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN

Query:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES
        CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY           FELDDKILES
Subjt:  CVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILES

Query:  LKVPVAA
        LKVPVAA
Subjt:  LKVPVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

3.7e-168

79.66

Show/hide

Query:  MAAL-PFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY
        MAAL   SSSLF+SKPSI+ PS +SP     SLSPIS+SS ++SSF+ISHS FL   SSS    R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFY
Subjt:  MAAL-PFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY

Query:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP
        FAK+LLGSGHEVTILTVGE+SSDKM KPPFNRF    S   +   GDPAE+GKV+ GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKP
Subjt:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP

Query:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
        TDEPPH   D VKADAGHVGVE+Y+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIF
Subjt:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF

Query:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE
        NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG            HFYAEPRAAQEILGWKS+TNLPEDLKERFEEY           FELDDKILE
Subjt:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

5.3e-167

79.17

Show/hide

Query:  MAAL-PFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY
        MAAL   SSSLF+SKPSI+ PS +SP     S+SPIS+ S ++SSF+ISHS FL   SSS    R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFY
Subjt:  MAAL-PFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFY

Query:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP
        FAK+LLGSGHEVTILTVGE+SSDKM KPPFNRF    S   +   GDPAE+GKV+ GASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKP
Subjt:  FAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKP

Query:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
        TDEPPH   D VKADAGHVGVE+Y+AEVFSSWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+NIF
Subjt:  TDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF

Query:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE
        NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPK VG            HFYAEPRAAQEILGWKS+TNLPEDLKERFEEY           FELDDKILE
Subjt:  NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDKILE

Query:  SLKVPVAA
        SLKVPVAA
Subjt:  SLKVPVAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

4.7e-136

66.67

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Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCS---FSVRASS-STKKKVLIVNTNSGGHAVI
        MAAL  SS  FSSK +    SPIS    P SL   S  S  SSSFS   S+  S+ S  + S R S   S   F+V+ASS   KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCS---FSVRASS-STKKKVLIVNTNSGGHAVI

Query:  GFYFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKELL +GH VTILTVG++SS+KM KPPFNRF    S   +   G+PA +  V+ G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKPTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK T++PPH   D VKADAGHV VEKY+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  
Subjt:  YKPTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDK
        NIFNCV+DRAVTLDGMAKLCA AAG+ V IVHYDPKA+G            HFYAEPRAA+++LGW+S TNLPEDLKERFEEY           FELDDK
Subjt:  NIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDK

Query:  ILESLKVPVAA
        ILE+LK PVAA
Subjt:  ILESLKVPVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

1.6e-40

33.94

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Query:  SSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSSDKM----NKPPFNRFSWWRQDRMGDPAE---IGKVLEGASFDVVLDNNGKDIDT
        S+S++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K     +   F  FS       GD  +   +   L    FDVV D NG++ + 
Subjt:  SSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSSDKM----NKPPFNRFSWWRQDRMGDPAE---IGKVLEGASFDVVLDNNGKDIDT

Query:  VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH---DLVKADAGHVG---VEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM
        V P+++      ++Q+++ SSAG+Y  +D  PH   D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG+
Subjt:  VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH---DLVKADAGHVG---VEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM

Query:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK               HF+A    A+ +LGWK   +L
Subjt:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNL

Query:  PEDLKE-----------RFEEYFELDDKIL
         E L +           R E  F  DD IL
Subjt:  PEDLKE-----------RFEEYFELDDKIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

1.2e-41

33.94

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Query:  SSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSSDKM----NKPPFNRFSWWRQDRMGDPAE---IGKVLEGASFDVVLDNNGKDIDT
        S+S++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K     +   F  FS       GD  +   +   L    FDVV D NG++ + 
Subjt:  SSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQSSDKM----NKPPFNRFSWWRQDRMGDPAE---IGKVLEGASFDVVLDNNGKDIDT

Query:  VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH---DLVKADAGHVG---VEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM
        V P+++      ++Q+++ SSAG+Y  +D  PH   D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG+
Subjt:  VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH---DLVKADAGHVG---VEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGM

Query:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNL
        Q++ + HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK               HF+A    A+ +LGWK   +L
Subjt:  QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNL

Query:  PEDLKE-----------RFEEYFELDDKIL
         E L +           R E  F  DD IL
Subjt:  PEDLKE-----------RFEEYFELDDKIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

3.3e-137

66.67

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Query:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCS---FSVRASS-STKKKVLIVNTNSGGHAVI
        MAAL  SS  FSSK +    SPIS    P SL   S  S  SSSFS   S+  S+ S  + S R S   S   F+V+ASS   KK VLIVNTNSGGHAVI
Subjt:  MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCS---FSVRASS-STKKKVLIVNTNSGGHAVI

Query:  GFYFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI
        GFYFAKELL +GH VTILTVG++SS+KM KPPFNRF    S   +   G+PA +  V+ G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGI
Subjt:  GFYFAKELLGSGHEVTILTVGEQSSDKMNKPPFNRF----SWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGI

Query:  YKPTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS
        YK T++PPH   D VKADAGHV VEKY+AE F +WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  
Subjt:  YKPTDEPPH---DLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHS

Query:  NIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDK
        NIFNCV+DRAVTLDGMAKLCA AAG+ V IVHYDPKA+G            HFYAEPRAA+++LGW+S TNLPEDLKERFEEY           FELDDK
Subjt:  NIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVG------------HFYAEPRAAQEILGWKSTTNLPEDLKERFEEY-----------FELDDK

Query:  ILESLKVPVAA
        ILE+LK PVAA
Subjt:  ILESLKVPVAA

Sequences

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CDS sequence

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ATGGCTGCTCTTCCTTTCTCATCTTCCCTTTTCTCTTCCAAGCCTTCCATCTATTTCCCATCTCCTATTTCTCCTTCTTTTACTCCTCTTTCACTTTCTCCAATCTCTAA
CTCTTCTCCTATTTCTTCTTCTTTCTCCATTTCCCATTCTAATTTTCTCTCCAATTACTCTTCGTCTTCTTCTTCTTTTAGACCCTCCACTGTCTGTTCCTTTAGTGTCA
GGGCTAGCTCTTCTACCAAGAAGAAGGTGTTGATTGTCAACACAAACAGCGGTGGGCATGCTGTCATTGGCTTCTATTTTGCTAAAGAGCTTCTGGGTTCTGGCCATGAA
GTCACGATTCTCACTGTGGGTGAACAGAGTTCTGATAAGATGAACAAACCCCCTTTCAACAGATTCTCTTGGTGGAGGCAAGACCGTATGGGAGATCCAGCTGAAATTGG
GAAGGTTCTTGAAGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATACTGTGAGGCCTGTTATTGATTGGGCAAAGAGCTCCGGTGTGAAGCAGT
TTCTATTTATCAGCAGTGCTGGAATCTATAAGCCAACTGATGAGCCTCCCCATGATCTTGTTAAAGCTGACGCTGGCCATGTTGGTGTTGAGAAATATATGGCGGAGGTT
TTCAGCAGCTGGGCTATCTTCCGTCCACAATACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGACAGAATTGTCCGGGACAGACCGATTCCAAT
TCCAGGCTCTGGTATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCCATGTTAACACTAGCTGTAGAGAAGCCGGATGAAGCACACTCTAACATATTCAACT
GCGTAACCGATCGAGCAGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGTCGTCCTGTTAACATAGTGCATTATGATCCAAAAGCAGTTGGGCATTTC
TATGCAGAACCAAGAGCAGCCCAGGAGATTTTAGGGTGGAAAAGCACCACAAATCTTCCTGAAGATTTGAAGGAACGATTTGAAGAGTATTTTGAATTAGATGATAAGAT
ACTTGAGTCCTTAAAAGTTCCAGTAGCTGCTTAA

mRNA sequence

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Protein sequence

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MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSSSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHE
VTILTVGEQSSDKMNKPPFNRFSWWRQDRMGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHDLVKADAGHVGVEKYMAEV
FSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGHF
YAEPRAAQEILGWKSTTNLPEDLKERFEEYFELDDKILESLKVPVAA

IVF0003107 (gene) of Melon (IVF77) v1 genome