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IVF0003110 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003110
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr02:10922866..10923189
RNA-Seq ExpressionIVF0003110
SyntenyIVF0003110
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.45e-5388.12Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KDR T ARSETFAD+GSNV NMFN DVPL DSHDQDIPMMYSQGVHMSPDE+FGIRAGQASERK CSSGSKRK+GS+HYETVE+IKSA+EFGNDQLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        N
Subjt:  N

KAA0035181.1 retrotransposon protein [Cucumis melo var. makuwa]4.58e-6494.39Show/hide
Query:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
        MSSTKIKDRVT+ARSETFADIGSNV NMFNDDVPLGDSHDQDIPMMYSQG HMSPDEIFGIRAGQASERKKCSSGSKRKRGSEH ETVEM++SALEFGND
Subjt:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND

Query:  QLKAIAN
        QLKAIAN
Subjt:  QLKAIAN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]6.62e-4877.23Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KD+ TEARSETFAD+GSN+ NMFND VPLGDSH +DIP MYSQGV MS DE+FG RAGQASER+ CSS SKRK+GS+HYETVE+I+SA++FGNDQLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        +
Subjt:  N

TYK21967.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]6.08e-69100Show/hide
Query:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
        MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
Subjt:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND

Query:  QLKAIAN
        QLKAIAN
Subjt:  QLKAIAN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.08e-4979.21Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQASER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        +
Subjt:  N

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.6e-3879.21Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQASER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        +
Subjt:  N

A0A5A7SQU2 Putative nuclease HARBI11.2e-4288.12Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KDR T ARSETFAD+GSNV NMFN DVPL DSHDQDIPMMYSQGVHMSPDE+FGIRAGQASERK CSSGSKRK+GS+HYETVE+IKSA+EFGNDQLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        N
Subjt:  N

A0A5A7T0R2 Retrotransposon protein4.1e-4894.39Show/hide
Query:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
        MSSTKIKDRVT+ARSETFADIGSNV NMFNDDVPLGDSHDQDIPMMYSQG HMSPDEIFGIRAGQASERKKCSSGSKRKRGSEH ETVEM++SALEFGND
Subjt:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND

Query:  QLKAIAN
        QLKAIAN
Subjt:  QLKAIAN

A0A5A7U0H7 Retrotransposon protein6.6e-3879.21Show/hide
Query:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA
        KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQASER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA
Subjt:  KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIA

Query:  N
        +
Subjt:  N

A0A5D3DE65 RING-H2 finger protein ATL661.0e-51100Show/hide
Query:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
        MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND
Subjt:  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGND

Query:  QLKAIAN
        QLKAIAN
Subjt:  QLKAIAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCGACAAAGATCAAAGATCGGGTAACAGAAGCGCGTTCAGAGACATTTGCTGATATAGGATCTAATGTGACAAACATGTTTAATGACGACGTTCCACTCGGTGA
TTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAA
GTGGAAGTAAGAGGAAACGAGGTAGTGAACATTATGAAACAGTAGAGATGATCAAGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCGACAAAGATCAAAGATCGGGTAACAGAAGCGCGTTCAGAGACATTTGCTGATATAGGATCTAATGTGACAAACATGTTTAATGACGACGTTCCACTCGGTGA
TTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAA
GTGGAAGTAAGAGGAAACGAGGTAGTGAACATTATGAAACAGTAGAGATGATCAAGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTAG
Protein sequenceShow/hide protein sequence
MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN