CuGenDBv2

Gene ID	IVF0003111
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	tig00007088:1457710..1457949
RNA-Seq Expression	IVF0003111
Synteny	IVF0003111
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

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GenBank top hits

e value

%identity

Alignment

ALI90961.1 Rpl23, partial [Apodytes dimidiata]

7.11e-44

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

AUB30625.1 ribosomal protein subunit L23 [Olea europaea subsp. guanchica]

5.48e-44

94.59

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK KYT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

RXV70581.1 50S ribosomal protein L23, partial [bacterium 1XD8-92]

4.99e-44

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

WP_189908500.1 50S ribosomal protein L23, partial [Streptomyces spiralis]

4.58e-44

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

YP_009707931.1 ribosomal protein L23 [Begonia pulchrifolia]

7.78e-44

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

TrEMBL top hits

e value

%identity

Alignment

A0A2H4V4Q8 Ribosomal protein subunit L23

1.0e-32

94.59

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK KYT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

A0A2L0VCX1 50S ribosomal protein L23

1.4e-32

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

A0A4D5Y878 50S ribosomal protein L23, chloroplastic

1.4e-32

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

A0A6B7GR59 50S ribosomal protein L23, chloroplastic

1.4e-32

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

F5C018 50S ribosomal protein L23, chloroplastic

1.4e-32

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

SwissProt top hits

e value

%identity

Alignment

A0A378 50S ribosomal protein L23, chloroplastic

8.2e-35

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Q06R67 50S ribosomal protein L23, chloroplastic

1.1e-34

91.89

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFT+KSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Q0PUX7 50S ribosomal protein L23, chloroplastic

1.4e-34

91.89

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGP MGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Q0ZIV5 50S ribosomal protein L23, chloroplastic

3.7e-35

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Q4VZK6 50S ribosomal protein L23, chloroplastic

3.7e-35

93.24

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGKGRRMGPIMGHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

3.2e-34

89.19

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGK +RMGPI+GHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

ATCG01300.1 ribosomal protein L23

3.2e-34

89.19

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Query:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR
        MDGIKYAVFTDKSIRLLGK +YT NVESGSTRTEIKHWVELFFGVKVIA++SHRLPGK +RMGPI+GHTMHYRR
Subjt:  MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRR

Sequences

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CDS sequence

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ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAGAAATATACTGATAATGTCGAATCAGGATCAACTAGGACAGAAATCAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATTCATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGAC
GTGAATATGGAATTTCATGA

mRNA sequence

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Protein sequence

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MDGIKYAVFTDKSIRLLGKKKYTDNVESGSTRTEIKHWVELFFGVKVIAIHSHRLPGKGRRMGPIMGHTMHYRREYGIS

IVF0003111 (gene) of Melon (IVF77) v1 genome