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IVF0003120 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003120
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:19197798..19198495
RNA-Seq ExpressionIVF0003120
SyntenyIVF0003120
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]4.55e-9083.95Show/hide
Query:  MAEKLPNTNIQGSPIIDCRSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRA
        MAEKLP+TNIQGSP IDCRSHPAAKGLLHKSFPYYDDLSYVFG D AT   SETF+  GSNV NMFNDGVPLGDSHNQDI  +YSQGVHMS+DE+FGIRA
Subjt:  MAEKLPNTNIQGSPIIDCRSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRA

Query:  GQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        GQASERRN SSGSKRKRGSKHYEMVEVI S  +FGN+QLKTI DWPK+KRATEVEL  EVVK
Subjt:  GQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.29e-7280.56Show/hide
Query:  RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG
        R   A K LLHKSFPYYDDL YVFGKDRAT+ RSETF+ VGSNVPNMFN  VPL DSH+QDIPMMYSQGVHMS DEMFGIRAGQASER+NCSSGSKRK+G
Subjt:  RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG

Query:  SKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        SKHYE VEVI+S ++FGN+QLK IA+WPK+KRATEVEL AEV+K
Subjt:  SKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]9.40e-7579.72Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS
        SHP  KGLL+KSFPYYDD+SYVFGKD+AT+ RSETF+ VGSN+PNMFNDGVPLGDSH++DIP MYSQGV MS+DEMFG RAGQASERRNCSS SKRK+GS
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS

Query:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        +HYE VEVIRS MKFGN+QLK IADW K+KRA +VEL A VVK
Subjt:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.88e-97100Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS
        SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS

Query:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
Subjt:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]9.48e-8065.37Show/hide
Query:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG
        MAEKLP TNIQ S  IDC                                           +SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF  
Subjt:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG

Query:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC
        VGSNV NMFND +PLGDSH++DIP MYSQGVHMS DEMFGIRAGQASERRNCSS SKRKRGS+ YE VEVIRSVM+FGN QLK IADWPK+KRA EVE+ 
Subjt:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC

Query:  AEVVK
        A+VVK
Subjt:  AEVVK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859535.2e-6365.37Show/hide
Query:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG
        MAEKLP TNIQ S  IDC                                           +SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF  
Subjt:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG

Query:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC
        VGSNV NMFND +PLGDSH++DIP MYSQGVHMS DEMFGIRAGQASERRNCSS SKRKRGS+ YE VEVIRSVM+FGN QLK IADWPK+KRA EVE+ 
Subjt:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC

Query:  AEVVK
        A+VVK
Subjt:  AEVVK

A0A5A7SQU2 Putative nuclease HARBI11.3e-5880.56Show/hide
Query:  RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG
        R   A K LLHKSFPYYDDL YVFGKDRAT+ RSETF+ VGSNVPNMFN  VPL DSH+QDIPMMYSQGVHMS DEMFGIRAGQASER+NCSSGSKRK+G
Subjt:  RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG

Query:  SKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        SKHYE VEVI+S ++FGN+QLK IA+WPK+KRATEVEL AEV+K
Subjt:  SKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

A0A5A7U0H7 Retrotransposon protein5.2e-6365.37Show/hide
Query:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG
        MAEKLP TNIQ S  IDC                                           +SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF  
Subjt:  MAEKLPNTNIQGSPIIDC-------------------------------------------RSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSG

Query:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC
        VGSNV NMFND +PLGDSH++DIP MYSQGVHMS DEMFGIRAGQASERRNCSS SKRKRGS+ YE VEVIRSVM+FGN QLK IADWPK+KRA EVE+ 
Subjt:  VGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELC

Query:  AEVVK
        A+VVK
Subjt:  AEVVK

A0A5A7USN6 Putative nuclease HARBI17.0e-76100Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS
        SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGS

Query:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
Subjt:  KHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

A0A5D3BZU3 Retrotransposon protein2.0e-7083.95Show/hide
Query:  MAEKLPNTNIQGSPIIDCRSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRA
        MAEKLP+TNIQGSP IDCRSHPAAKGLLHKSFPYYDDLSYVFG D AT   SETF+  GSNV NMFNDGVPLGDSHNQDI  +YSQGVHMS+DE+FGIRA
Subjt:  MAEKLPNTNIQGSPIIDCRSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRA

Query:  GQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK
        GQASERRN SSGSKRKRGSKHYEMVEVI S  +FGN+QLKTI DWPK+KRATEVEL  EVVK
Subjt:  GQASERRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGAAGTTGCCCAACACTAATATCCAAGGATCGCCGATAATAGATTGTCGTAGTCATCCTGCAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGA
TCTATCCTATGTCTTCGGCAAAGATCGGGCAACAAAAGAACGTTCAGAGACCTTTTCTGGTGTAGGATCTAATGTGCCAAACATGTTTAATGACGGTGTTCCCCTCGGTG
ATTCACATAATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCAATCGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCA
AGTGGAAGTAAGAGGAAACGAGGTAGCAAACATTATGAAATGGTAGAGGTGATCAGGAGTGTAATGAAATTTGGAAATAATCAATTAAAAACAATTGCAGATTGGCCAAA
AAAGAAGCGTGCAACGGAGGTCGAATTGTGTGCTGAAGTTGTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGAAGTTGCCCAACACTAATATCCAAGGATCGCCGATAATAGATTGTCGTAGTCATCCTGCAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGA
TCTATCCTATGTCTTCGGCAAAGATCGGGCAACAAAAGAACGTTCAGAGACCTTTTCTGGTGTAGGATCTAATGTGCCAAACATGTTTAATGACGGTGTTCCCCTCGGTG
ATTCACATAATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCAATCGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCA
AGTGGAAGTAAGAGGAAACGAGGTAGCAAACATTATGAAATGGTAGAGGTGATCAGGAGTGTAATGAAATTTGGAAATAATCAATTAAAAACAATTGCAGATTGGCCAAA
AAAGAAGCGTGCAACGGAGGTCGAATTGTGTGCTGAAGTTGTGAAATAG
Protein sequenceShow/hide protein sequence
MAEKLPNTNIQGSPIIDCRSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCS
SGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK