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IVF0003130 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003130
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:8809196..8809620
RNA-Seq ExpressionIVF0003130
SyntenyIVF0003130
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]2.28e-6793.33Show/hide
Query:  LACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQD
        LACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQGIDLSQD
Subjt:  LACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQD

Query:  DARAS
        D RAS
Subjt:  DARAS

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]6.82e-6890.74Show/hide
Query:  MWVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDL
        MW  ACSGFGWNDEEKCI+ EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQGIDL
Subjt:  MWVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDL

Query:  SQDDARAS
        SQDD RAS
Subjt:  SQDDARAS

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]1.09e-6690.38Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+F PVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]1.84e-6692.31Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]5.76e-6791.35Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

TrEMBL top hitse value%identityAlignment
A0A5A7SI64 Retrotransposon protein1.5e-5393.33Show/hide
Query:  LACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQD
        LACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQGIDLSQD
Subjt:  LACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQD

Query:  DARAS
        D RAS
Subjt:  DARAS

A0A5A7TGP1 Retrotransposon protein8.6e-5490.74Show/hide
Query:  MWVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDL
        MW  ACSGFGWNDEEKCI+ EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQGIDL
Subjt:  MWVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDL

Query:  SQDDARAS
        SQDD RAS
Subjt:  SQDDARAS

A0A5A7TRV1 Retrotransposon protein9.5e-5391.35Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

A0A5A7VES2 Retrotransposon protein7.3e-5392.31Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

A0A5D3CWL2 Retrotransposon protein9.5e-5391.35Show/hide
Query:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD
        ACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG DR TG+F ETFADVGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDD
Subjt:  ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDD

Query:  ARAS
         RAS
Subjt:  ARAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein6.2e-0429.41Show/hide
Query:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVF
        +L   GF W++    I A+  ++D++++ HP A+    K  P Y++L  +F
Subjt:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVF

AT2G24960.2 unknown protein5.1e-0626.23Show/hide
Query:  WVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQF
        ++L  +GF W+     +IA+ ++++ ++++HP A+    K  P Y  L ++FG +   G++
Subjt:  WVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQF

AT4G02210.1 unknown protein1.5e-0526.92Show/hide
Query:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG
        +L   GF W++E + + A+  ++ +++++H  A+  + +P PYY +L  + G
Subjt:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG

AT4G02210.2 unknown protein1.5e-0526.92Show/hide
Query:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG
        +L   GF W++E + + A+  ++ +++++H  A+  + +P PYY +L  + G
Subjt:  VLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTGCTAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGG
ACTCCTAAACAAACCATTCCCATATTACGACGAACTTACATATGTCTTCGGTCACGATAGGGTGACCGGTCAGTTCATTGAGACATTCGCGGACGTCGGGTCTAACGAGC
CTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTTCCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGCACGTGCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTGCTAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGG
ACTCCTAAACAAACCATTCCCATATTACGACGAACTTACATATGTCTTCGGTCACGATAGGGTGACCGGTCAGTTCATTGAGACATTCGCGGACGTCGGGTCTAACGAGC
CTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTTCCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGCACGTGCATCCTGA
Protein sequenceShow/hide protein sequence
MWVLACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRVTGQFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDARAS