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IVF0003143 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003143
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMethyl-CpG-binding domain-containing protein 13 isoform X1
Genome locationchr08:18948552..18949314
RNA-Seq ExpressionIVF0003143
SyntenyIVF0003143
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001739 - Methyl-CpG DNA binding
IPR016177 - DNA-binding domain superfamily
IPR038945 - Methyl-CpG-binding domain-containing protein 13-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033633.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]5.58e-6281.62Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEV
        SGKVSRLAHKSRNQRDSTIDLQHDEIS  V+   EV
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEV

TYK22932.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]2.66e-6588.8Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKS
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS

Query:  RNQRDSTIDLQHDEISVSVLEVLEV
        RNQRDSTIDLQHDEIS  V+   EV
Subjt:  RNQRDSTIDLQHDEISVSVLEVLEV

XP_008439209.1 PREDICTED: uncharacterized protein LOC103484069 isoform X2 [Cucumis melo]5.21e-10488.64Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC
        SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYE+NVVFWSGAPLRFPLSNVGPC
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC

XP_008439211.1 PREDICTED: uncharacterized protein LOC103484069 isoform X3 [Cucumis melo]5.06e-6685.04Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEIS
        SGKVSRLAHKSRNQRDSTIDLQHDEIS
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEIS

XP_011651144.1 methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus]5.67e-6285.6Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS
        MRFNSRAEVFRYLKTAAICHP+SEESRTVKEP NNVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+PVNG+ALRSIRDVH+YLTSGKVSRL HKS
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS

Query:  RNQRDSTIDLQHDEISVSVLEVLEV
        RNQRD+ I+ QHDEIS  V+   EV
Subjt:  RNQRDSTIDLQHDEISVSVLEVLEV

TrEMBL top hitse value%identityAlignment
A0A0A0L6H4 MBD domain-containing protein3.6e-5185.6Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS
        MRFNSRAEVFRYLKTAAICHP+SEESRTVKEP NNVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+PVNG+ALRSIRDVH+YLTSGKVSRL HKS
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS

Query:  RNQRDSTIDLQHDEISVSVLEVLEV
        RNQRD+ I+ QHDEIS  V+   EV
Subjt:  RNQRDSTIDLQHDEISVSVLEVLEV

A0A1S3AYW3 uncharacterized protein LOC103484069 isoform X22.2e-8088.64Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC
        SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYE+NVVFWSGAPLRFPLSNVGPC
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC

A0A1S3AYW9 uncharacterized protein LOC103484069 isoform X36.1e-5185.04Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEIS
        SGKVSRLAHKSRNQRDSTIDLQHDEIS
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEIS

A0A5A7ST33 Methyl-CpG-binding domain-containing protein 13 isoform X11.6e-5181.62Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLT
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLT

Query:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEV
        SGKVSRLAHKSRNQRDSTIDLQHDEIS  V+   EV
Subjt:  SGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEV

A0A5D3DH45 Methyl-CpG-binding domain-containing protein 13 isoform X14.5e-5488.8Show/hide
Query:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS
        MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNVEVKKTIAKDL TGWIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKS
Subjt:  MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKS

Query:  RNQRDSTIDLQHDEISVSVLEVLEV
        RNQRDSTIDLQHDEIS  V+   EV
Subjt:  RNQRDSTIDLQHDEISVSVLEVLEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTGAAAACTGCAGCAATCTGTCATCCTAAATCTGAAGAAAGCAGAACCGTCAAGGAACCAAGGAACAATGTGGA
AGTTAAGAAGACTATAGCAAAAGATTTATCTACTGGATGGATCGGAGAAATCAGAGAAATGAAGACTGCTAACAGAATAAGAAGAGATTCATCTTACATTAATCCAGTAA
ATGGACATGCACTTCGTTCAATAAGGGATGTACATCAGTATCTAACAAGTGGCAAGGTGAGCCGATTAGCACATAAATCAAGGAACCAGAGAGATAGCACCATTGACCTT
CAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCGAAGTTAAAAATGATTATAGTCCCAAGAGTGTTCATCAATTGGTCCAACTATCACTTTATGAATTGAATGT
AGTATTTTGGAGTGGTGCCCCTCTTCGATTCCCTCTCTCCAATGTGGGCCCTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTGAAAACTGCAGCAATCTGTCATCCTAAATCTGAAGAAAGCAGAACCGTCAAGGAACCAAGGAACAATGTGGA
AGTTAAGAAGACTATAGCAAAAGATTTATCTACTGGATGGATCGGAGAAATCAGAGAAATGAAGACTGCTAACAGAATAAGAAGAGATTCATCTTACATTAATCCAGTAA
ATGGACATGCACTTCGTTCAATAAGGGATGTACATCAGTATCTAACAAGTGGCAAGGTGAGCCGATTAGCACATAAATCAAGGAACCAGAGAGATAGCACCATTGACCTT
CAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCGAAGTTAAAAATGATTATAGTCCCAAGAGTGTTCATCAATTGGTCCAACTATCACTTTATGAATTGAATGT
AGTATTTTGGAGTGGTGCCCCTCTTCGATTCCCTCTCTCCAATGTGGGCCCTTGCTAA
Protein sequenceShow/hide protein sequence
MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDL
QHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC