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IVF0003147 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003147
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:6747076..6747469
RNA-Seq ExpressionIVF0003147
SyntenyIVF0003147
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035408.1 retrotransposon protein [Cucumis melo var. makuwa]1.21e-1955.26Show/hide
Query:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCG-DLYGHCIQCAEQQR
        G   S FGWNDE KCII +K+LFD+W+R+HP AKGLLNKPFSYYDEL+Y  +R    G  G DL    ++ +   R
Subjt:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCG-DLYGHCIQCAEQQR

KAA0039536.1 retrotransposon protein [Cucumis melo var. makuwa]3.58e-2052Show/hide
Query:  EEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY
        E D+ GH R+ G   S FGWNDE KCII +K L+D+W+R+HP+AKGLLNK F YY+EL+Y   R+   G   + +
Subjt:  EEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY

KAA0053727.1 retrotransposon protein [Cucumis melo var. makuwa]4.34e-2057.81Show/hide
Query:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY
        G   S FGWNDE KCII +K+LFD+W+R+HP AKGLLNKPF YYDEL+Y  +R    G   + +
Subjt:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY

KAA0063919.1 retrotransposon protein [Cucumis melo var. makuwa]8.80e-2161.9Show/hide
Query:  SDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARE-RSSHRGSCGDLYGH
        S F WND+VKCII ++D+ D+WIRTHP+AKGLLNKPF +YD+LSY  E R  + G CGD++ H
Subjt:  SDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARE-RSSHRGSCGDLYGH

TYK18691.1 retrotransposon protein [Cucumis melo var. makuwa]8.80e-7499.03Show/hide
Query:  MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE
        MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE
Subjt:  MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE

Query:  QQR
        +QR
Subjt:  QQR

TrEMBL top hitse value%identityAlignment
A0A5A7T2Q2 Retrotransposon protein2.0e-1559.38Show/hide
Query:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY
        G   S FGWNDE KCI+ +K+LFD+W+R+HP AKGLLNKPFSYYDEL+Y   R    G  G+ +
Subjt:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY

A0A5A7ULC5 Retrotransposon protein2.6e-1559.38Show/hide
Query:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY
        G   S FGWNDE KCII +K+LFD+W+R+HP AKGLLNKPFSYYDEL+Y  +R    G   + +
Subjt:  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLY

A0A5D3CHE3 Retrotransposon protein1.2e-1561.9Show/hide
Query:  SDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARE-RSSHRGSCGDLYGH
        S F WND+VKCII ++D+ D+WIRTHP+AKGLLNKPF +YD+LSY  E R  + G CGD++ H
Subjt:  SDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARE-RSSHRGSCGDLYGH

A0A5D3D568 Retrotransposon protein2.6e-5599.03Show/hide
Query:  MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE
        MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE
Subjt:  MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAE

Query:  QQR
        +QR
Subjt:  QQR

A0A5D3D9Q6 Retrotransposon protein2.6e-1562.71Show/hide
Query:  EGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRG
        +G   S FGWNDE KCII +K+LFD+W+R+HP+AKGLLNKPF YYDEL+Y  +R    G
Subjt:  EGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGATGTAACTGACGACGACCGTCATCAAAAGCTGAATAAAATTGTTGAAGAAGACGTTTCAGGCCATTGTCGAGATGAGGGCTCAACAAGCAGTGACTTCGGCTG
GAATGATGAGGTCAAGTGTATCATCGTCAAGAAGGACCTGTTCGACCATTGGATTCGGACGCACCCTATAGCGAAAGGACTCCTCAACAAGCCATTCTCGTATTACGACG
AGCTATCGTACGCTCGAGAAAGATCCAGCCATAGGGGCTCATGTGGAGACCTTTACGGACATTGCATCCAATGTGCCGAGCAACAACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGATGTAACTGACGACGACCGTCATCAAAAGCTGAATAAAATTGTTGAAGAAGACGTTTCAGGCCATTGTCGAGATGAGGGCTCAACAAGCAGTGACTTCGGCTG
GAATGATGAGGTCAAGTGTATCATCGTCAAGAAGGACCTGTTCGACCATTGGATTCGGACGCACCCTATAGCGAAAGGACTCCTCAACAAGCCATTCTCGTATTACGACG
AGCTATCGTACGCTCGAGAAAGATCCAGCCATAGGGGCTCATGTGGAGACCTTTACGGACATTGCATCCAATGTGCCGAGCAACAACGATAG
Protein sequenceShow/hide protein sequence
MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAEQQR