; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0003186 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003186
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr02:18153106..18156793
RNA-Seq ExpressionIVF0003186
SyntenyIVF0003186
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.57e-3273.86Show/hide
Query:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQ
        ER F VRNHWKC CS+GNGLS RT G  PKKT+ARM  TQ SRP VK+DP T+SSLCFVL ISLSIF A TLRT +HTPGMLP +FSQ
Subjt:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQ

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.23e-6954.32Show/hide
Query:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV
        +K NGL+  T    PKKT+ARM RTQ  RP  K  P TISSLC VLVISL IF A TLRT +HTPGM+  +F   I  EAS LE EL E NGLS++  + 
Subjt:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV

Query:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFF---QGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGI
        R  KT+AR PRTQFSRPG K G PTVSSLC V  ISLSIF ART RTS  +SGMLP+ F     G  L+ S    EL+     +  +   I P + +  +
Subjt:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFF---QGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGI

Query:  D-------------RETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
                      RE S  + EL CD KRSKRW M PT+GERSSGVRN+WKCT SEGN L  RTS   PKKTR RMP
Subjt:  D-------------RETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.98e-3238.18Show/hide
Query:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV
        SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H        P +  Y     +  E +       EGNGLS+RT  V
Subjt:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV

Query:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH
        R +K +AR PRT F    VK    TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +      +T  + P I+P  F  
Subjt:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH

Query:  GIDRETSLSKGEL--------RCDPKRSK--RWRMLPT--------SGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
        GI RE S  +GEL        R    R +  R RM  T        SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Subjt:  GIDRETSLSKGEL--------RCDPKRSK--RWRMLPT--------SGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.45e-5546.52Show/hide
Query:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAE
        ERS  VRN WKCTC +GNGLS RT G  PKKT+ARM +TQ SRP  K+DP T+S+LC VLV SLSIFGA T RT +HTPGMLP +FS+   RE       
Subjt:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAE

Query:  LREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIGLEASSLEGELRARTARTPTH
                                                                  PR S L  G L  P+ FF  + +   S++  LR  T RT TH
Subjt:  LREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIGLEASSLEGELRARTARTPTH

Query:  TPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT
        T  +LP TF  GI RE S  +GEL CDPK SKRW MLPT GERSSG RN+WKCT SEGN L  RTS   P+KT
Subjt:  TPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]2.37e-5742.7Show/hide
Query:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV----------------------------------------------KNDPSTIS
        ERS+ VRNHWK TC++ N LS RTF V  K TQAR  RT    P +                                              K    T+S
Subjt:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV----------------------------------------------KNDPSTIS

Query:  SLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------EGNGLSTRTYTVRLKKTQARS
        SL F+LVISL IFGAHT RT +HT  MLP  FSQ I REASSLE ELR                               E N L +RT  V  KKT AR 
Subjt:  SLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------EGNGLSTRTYTVRLKKTQARS

Query:  PRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGEL---RARTARTPTHTPSILPGTFYHGIDRETSLSKG
        P+TQF RP                            RT   + GMLP+ F QGIG EASSLEGEL   R R+ R P     +LP +  H   R+ S  +G
Subjt:  PRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGEL---RARTARTPTHTPSILPGTFYHGIDRETSLSKG

Query:  ELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
        ELR DPK SKRW MLPTSGERSSGVRN+WKCT SEGN L  RT    PKKT  R P
Subjt:  ELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.9e-6054.68Show/hide
Query:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV
        +K NGL+  T    PKKT+ARM RTQ  RP  K  P TISSLC VLVISL IF A TLRT +HTPGM+  +F   I  EAS LE EL E NGLS++  + 
Subjt:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV

Query:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMF---FQGIGLEASSLEGELRARTARTPTHTPSILPGT-----
        R  KT+AR PRTQFSRPG K G PTVSSLC V  ISLSIF ART RTS  +SGMLP+ F     G  L+ S    EL+     +  +   I P +     
Subjt:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMF---FQGIGLEASSLEGELRARTARTPTHTPSILPGT-----

Query:  --------FYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
                F+  + RE S  + EL CD KRSKRW M PT+GERSSGVRN+WKCT SEGN L  RTS   PKKTR RMP
Subjt:  --------FYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

A0A5A7VGQ5 Uncharacterized protein4.8e-2736.49Show/hide
Query:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV
        SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H        P +  Y     +  E +       EGNGLS+RT  V
Subjt:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV

Query:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH
        R +K +AR PRT F    VK    TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +      +T  + P I+P  F  
Subjt:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH

Query:  GIDRETSLSKGEL------------------RCDPKRSKRWRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
        GI RE    +GEL                  R    R++ +     SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Subjt:  GIDRETSLSKGEL------------------RCDPKRSKRWRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

A0A5D3BG85 Uncharacterized protein7.3e-2836.82Show/hide
Query:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV
        SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H        P +  Y     +  E +       EGNGLS+RT  V
Subjt:  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTV

Query:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH
        R +K +AR PRT F    VK    TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +      +T  + P I+P  F  
Subjt:  RLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-----ARTPTHTPSILPGTFYH

Query:  GIDRETSLSKGEL------------------RCDPKRSKRWRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
        GI RE S  +GEL                  R    R++ +     SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Subjt:  GIDRETSLSKGEL------------------RCDPKRSKRWRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

A0A5D3DFP2 Uncharacterized protein4.1e-4746.52Show/hide
Query:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAE
        ERS  VRN WKCTC +GNGLS RT G  PKKT+ARM +TQ SRP  K+DP T+S+LC VLV SLSIFGA T RT +HTPGMLP +FS+   RE       
Subjt:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAE

Query:  LREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIGLEASSLEGELRARTARTPTH
                                                                  PR S L  G L  P+ FF  + +   S+  +LR  T RT TH
Subjt:  LREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIGLEASSLEGELRARTARTPTH

Query:  TPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT
        T  +LP TF  GI RE S  +GEL CDPK SKRW MLPT GERSSG RN+WKCT SEGN L  RTS   P+KT
Subjt:  TPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT

A0A5D3DIF8 Gag/pol protein4.4e-4942.21Show/hide
Query:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV----------------------------------------------KNDPSTIS
        ERS+ VRNHWK TC++ N LS RTF V  K TQAR  RT    P +                                              K    T+S
Subjt:  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV----------------------------------------------KNDPSTIS

Query:  SLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------EGNGLSTRTYTVRLKKTQARS
        SL F+LVISL IFGAHT RT +HT  MLP  FSQ I REASSLE ELR                               E N L +RT  V  KKT AR 
Subjt:  SLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------EGNGLSTRTYTVRLKKTQARS

Query:  PRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELR
        P+TQF R                            PRT   + GMLP+ F QGIG EASSLEGEL+    R  ++   +LP +  H   R+ S  +GELR
Subjt:  PRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELR

Query:  CDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
         DPK SKRW MLPTSGERSSGVRN+WKCT SEGN L  RT    PKKT  R P
Subjt:  CDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGATGCTTCCAACGAGTGTGAACGGTCGTTCAGTGTTAGAAACCATTGGAAATGCACTTGTAGCAAGGGAAACGGGCTAAGCCTGAGGACTTTTGGTGTTTTTCC
CAAGAAAACACAAGCGAGAATGCTCCGGACTCAGCTTTCTCGTCCTGTGGTAAAAAACGATCCCTCGACGATTTCATCCCTTTGTTTTGTATTGGTCATAAGTCTTTCAA
TCTTTGGGGCTCATACTTTGAGGACTTTTTCCCACACTCCTGGCATGCTCCCTTACTCGTTTTCCCAAGCTATACGTCGGGAAGCGAGCTCATTGGAGGCAGAACTAAGG
GAAGGAAACGGGCTGAGCACGAGGACTTACACTGTTCGTCTCAAGAAAACGCAAGCGAGAAGTCCTCGGACTCAGTTTTCTCGTCCTGGGGTAAAAGACGGTCTCCCGAC
GGTTTCTTCCCTTTGCTTCGTATTTGACATAAGTCTTTCGATCTTCACAGCTCGTACTCCGAGGACTTCAAACCTCTCTTCTGGCATGCTCCCTAACATGTTTTTCCAAG
GTATAGGTCTGGAAGCGAGCTCGTTGGAGGGAGAACTAAGAGCACGTACTGCAAGAACACCAACCCACACTCCTAGCATACTCCCCGGTACGTTTTACCATGGTATAGAT
CGTGAGACGAGCTTGTCGAAAGGAGAATTAAGGTGTGACCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCCTCTGGTGTCAGAAACAACTG
GAAATGCACTTACAGCGAAGGAAACAGGCTGTGCTTGAGGACTTCCAGTGTTTGTCCCAAGAAAACTCGAGTGAGAATGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCGATGCTTCCAACGAGTGTGAACGGTCGTTCAGTGTTAGAAACCATTGGAAATGCACTTGTAGCAAGGGAAACGGGCTAAGCCTGAGGACTTTTGGTGTTTTTCC
CAAGAAAACACAAGCGAGAATGCTCCGGACTCAGCTTTCTCGTCCTGTGGTAAAAAACGATCCCTCGACGATTTCATCCCTTTGTTTTGTATTGGTCATAAGTCTTTCAA
TCTTTGGGGCTCATACTTTGAGGACTTTTTCCCACACTCCTGGCATGCTCCCTTACTCGTTTTCCCAAGCTATACGTCGGGAAGCGAGCTCATTGGAGGCAGAACTAAGG
GAAGGAAACGGGCTGAGCACGAGGACTTACACTGTTCGTCTCAAGAAAACGCAAGCGAGAAGTCCTCGGACTCAGTTTTCTCGTCCTGGGGTAAAAGACGGTCTCCCGAC
GGTTTCTTCCCTTTGCTTCGTATTTGACATAAGTCTTTCGATCTTCACAGCTCGTACTCCGAGGACTTCAAACCTCTCTTCTGGCATGCTCCCTAACATGTTTTTCCAAG
GTATAGGTCTGGAAGCGAGCTCGTTGGAGGGAGAACTAAGAGCACGTACTGCAAGAACACCAACCCACACTCCTAGCATACTCCCCGGTACGTTTTACCATGGTATAGAT
CGTGAGACGAGCTTGTCGAAAGGAGAATTAAGGTGTGACCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCCTCTGGTGTCAGAAACAACTG
GAAATGCACTTACAGCGAAGGAAACAGGCTGTGCTTGAGGACTTCCAGTGTTTGTCCCAAGAAAACTCGAGTGAGAATGCCCTAG
Protein sequenceShow/hide protein sequence
MTDASNECERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELR
EGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGID
RETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP