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IVF0003222 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003222
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:15475852..15476037
RNA-Seq ExpressionIVF0003222
SyntenyIVF0003222
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]5.67e-1661.67Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        M P++IMGT+P  SSE +T S+G KRK+GGQ +E  EIIR+A EY N QLK IAEW NV+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

KAA0047716.1 retrotransposon protein [Cucumis melo var. makuwa]3.55e-1461.67Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        M  DDIMGT+P R+S+ R  S+GSKRKQG Q VE+ +IIRSAMEY N  L  IA+WS +Q
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]8.05e-3198.31Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV
        MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSN+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.25e-2075Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        ML DDIMGTRP RS+E RTGSSGSKRKQGGQ VE++EIIR+ ME+ N +LKAI EW NVQ
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

KAA0061292.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]2.81e-1569.49Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV
        M PDD MGT   RSSE R GS GSKRKQG Q VE+V+II +AMEY N QLK IAEWSN+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL661.5e-1061.67Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        M P++IMGT+P  SSE +T S+G KRK+GGQ +E  EIIR+A EY N QLK IAEW NV+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

A0A5A7UZF5 RING-H2 finger protein ATL662.5e-1069.49Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV
        M PDD MGT   RSSE R GS GSKRKQG Q VE+V+II +AMEY N QLK IAEWSN+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV

A0A5A7V3C0 Retrotransposon protein1.7e-2298.31Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV
        MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSN+
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV

A0A5A7V469 Retrotransposon protein7.6e-1575Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        ML DDIMGTRP RS+E RTGSSGSKRKQGGQ VE++EIIR+ ME+ N +LKAI EW NVQ
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

A0A5D3CAJ4 Retrotransposon protein2.5e-1061.67Show/hide
Query:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ
        M  DDIMGT+P R+S+ R  S+GSKRKQG Q VE+ +IIRSAMEY N  L  IA+WS +Q
Subjt:  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGA
AATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGA
AATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA
Protein sequenceShow/hide protein sequence
MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQS