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IVF0003276 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003276
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionthioredoxin-like protein 4B
Genome locationchr01:22049880..22056937
RNA-Seq ExpressionIVF0003276
SyntenyIVF0003276
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]8.69e-9794.04Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFH+KQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]3.15e-9996.69Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKWVGAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQL YKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

XP_008447285.1 PREDICTED: thioredoxin-like protein 4B [Cucumis melo]2.31e-10199.34Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLL+KDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]4.31e-9794.04Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKD+
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]6.12e-9794.04Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFH+KQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B8.3e-7999.34Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLL+KDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

A0A6J1DGN8 thioredoxin-like protein 4B1.5e-7594.04Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKD+
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

A0A6J1GQC5 thioredoxin-like protein 4B9.5e-7593.38Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFH+KQ+FIDVVEAIFRGAMKGKLIV+CPLPPE+IPKYQLLYKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

A0A6J1JT18 thioredoxin-like protein 4B1.9e-7594.04Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKW+GAFH+KQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

A0A6P4ATD0 thioredoxin-like protein 4B1.7e-7189.4Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLTKK EVDS+I+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVYV YFDITLIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKWVGAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLLYKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.5e-1635.56Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ  +D++E ++RGA KG+ +V  P
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP

P83877 Thioredoxin-like protein 4A1.5e-1635.56Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ  +D++E ++RGA KG+ +V  P
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP

Q8BUH1 Thioredoxin-like protein 4B5.2e-4659.6Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTK+VG+F  KQ+FID++E I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

Q9FE62 Thioredoxin-like protein YLS81.1e-1637.96Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEMQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEMQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B2.3e-4660.26Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTK+VG+F  KQ+FID++E I+RGAM+GKLIV  P+ P+ IPKY LLY+D+
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.1e-6778.81Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV
        HTKWVGAFH KQ+FIDVVEAI+RGAMKGK+IV CP+PPE+IPKYQL+YKDV
Subjt:  HTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP8.1e-1837.96Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEMQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEMQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWVGAFHQKQNFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTATCTTCTAAGAACCTTAACAAAGAAGGGAGAAGTGGATTCCCTTATTAGGGATACGATTGATAAGGTCCTAATTCTCCGATTTGGGCGGTGTTCTGATTCAGT
GTGTCTCCTCCTTGATGACATTCTTGCTAAGTGCGCACGAGAAGTATCCAAGTTTGCTTCAATAGCATTGGTTGATATTGATTCAGAAGAAATGCAGGTTTATGTCAAGT
ACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCCCATCATATGAAGATGGATTCTGGGACTGCAGATCATACAAAGTGGGTTGGCGCTTTTCACCAA
AAGCAGAATTTTATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCTGAGCAAATTCCAAAATACCAGCTATT
ATACAAGGATGTGTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAGGAAGAAGGGGAAGAAAGAAAGAAATTGATACAGCCCTTGCTAGCGGCTTATTCCCTCTCCCTCCCCTGCAAGCTGCTCCGGTGGTCGTCCATTCTCTTTGTCT
TCTTCACAGATCTTCTTCTCTCCTTTGGTTTCAAGGCAAAGGAGGATGAGCTATCTTCTAAGAACCTTAACAAAGAAGGGAGAAGTGGATTCCCTTATTAGGGATACGAT
TGATAAGGTCCTAATTCTCCGATTTGGGCGGTGTTCTGATTCAGTGTGTCTCCTCCTTGATGACATTCTTGCTAAGTGCGCACGAGAAGTATCCAAGTTTGCTTCAATAG
CATTGGTTGATATTGATTCAGAAGAAATGCAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCCCATCATATGAAGATGGAT
TCTGGGACTGCAGATCATACAAAGTGGGTTGGCGCTTTTCACCAAAAGCAGAATTTTATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGT
GAATTGTCCGTTGCCTCCTGAGCAAATTCCAAAATACCAGCTATTATACAAGGATGTGTAGGAGATGAACTGGTGTGTAGAGGCTTTACGTCAAGTTGCCATAACTGAAG
AATGACTTAAATGAATTGAAATTCCATGAAGAATGTTGCCAAAATGCTCTCGTATCTCCATATTTCCTCTGCATTTGAAGCATTTCAACATTTCTGGTGGTACGTTTGGA
ATTTGGGGAACAGAAGAAAAGTTTGTGTGAGCATTTTCTTCAGCTACCTATAGAAAATTAGGTTAAGTTGAGAAAGTTCAGGTTATGTATTTGTTTCAAGTGGTGAGATT
ATAGTTCATTCCCTCTCTTCATTTGTGGAACTAATTTCCCTTGTGTTAGATTGCTAGTTCGTCAGTGGGAGATTAATCATGTGTAAAACCATCTCGTATATTTTTATTTT
GTGAAACACATTAATGAAAATAGTGAATGTTTTCTTCACCGAGTTACTTGGAAGCAATAGAATGAATGATTCAAG
Protein sequenceShow/hide protein sequence
MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQ
KQNFIDVVEAIFRGAMKGKLIVNCPLPPEQIPKYQLLYKDV