; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0003278 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003278
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationchr11:2588028..2588923
RNA-Seq ExpressionIVF0003278
SyntenyIVF0003278
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045720.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]9.37e-10975.44Show/hide
Query:  MKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITV
        MKLIQLGITASND GQIGGSWEFNFSDFDFQVD+HSPSAIPFLEKNG                                          YLIKAMGLIT+
Subjt:  MKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITV

Query:  LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMI-
        LP+SMEEFA LVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRF MT EVCNGFLYGFS+SLESMKM  
Subjt:  LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMI-

Query:  ---IYHHNILRLGQIPHFPYTPSCIISH
           IY HNILRLGQIPHFPYTPSCIISH
Subjt:  ---IYHHNILRLGQIPHFPYTPSCIISH

KAA0045730.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]1.76e-17885.91Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFDFQVDSHSPSAIPFLEKNG                                          YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
Subjt:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH
        RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH
Subjt:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH

KAG6604931.1 putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. sororia]5.57e-8349.47Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MG RN+ R RR + P I++VWASNF+ EI + + CL+ + IL+IDTEFPG I  +P  SIDE +Y++ RFNVNQ KLIQLG+TAS++ GQ+ GSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFD Q+D+ +PS+I FLE+NG                                          YL+KAMG+   LP+SMEEFA +V   VG+VRDLK +A
Subjt:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQI
        R+CEGLE GR+GLERLG++L +KRFGMKH+AGSDSLLTA  H +M + F +     +G LYG    LE MK+    +  +  GQI
Subjt:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQI

XP_031736916.1 putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]1.06e-13171.18Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MGGRNQTRS R +KP IRQVWASNF+SEI +FDECLRFHTILTIDTEFPGFI QSPR SID+E+YK+F FNVNQ KLIQLGITAS+D GQIGGSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFDF+ D+HSP AIPFLE NG                                          YLIKAMGLITVLPKSMEEFAT+VVNEVGIVRDLKHMA
Subjt:  DFDFQVDSHSPSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLED-GRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMI----IYHHNILRLG
        +FCEGL+D GRLGLERLGK+LN KRFGMKHNAGSDSLLTASAH EMV+RFGM  +VCNGFLYGFSE+LESMKM     I HHNILR  
Subjt:  RFCEGLED-GRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMI----IYHHNILRLG

XP_038895744.1 putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]3.05e-10756.7Show/hide
Query:  RSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHS
        R +K  I +VWASNF++EI++ +ECL FHTI++IDTEFPGFI  SP  SIDE +Y++FRFNVNQ KLIQLG+TA +D G+IGGSWEFNFSDFD ++D+ S
Subjt:  RSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHS

Query:  PSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGR
        PS+  FLE+NG                                          YLIKAMG+  VLP++MEEFAT+VV  +GIVRDLKHMARFCEGLEDG+
Subjt:  PSAIPFLEKNG------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGR

Query:  LGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESM--KMIIYHHNILRLGQIPH----FPYTPSCI
        LGLERLGK+L++KR+G+KHNAGSDSLLTASAHFEM++RF M  E+C+G+LYGFS  L+SM   M ++H  I+  GQIP+    + Y PS I
Subjt:  LGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESM--KMIIYHHNILRLGQIPH----FPYTPSCI

TrEMBL top hitse value%identityAlignment
A0A0A0LPP0 Poly(A)-specific ribonuclease1.3e-10371.68Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MGGRNQTRS R +KP IRQVWASNF+SEI +FDECLRFHTILTIDTEFPGFI QSPR SID+E+YK+F FNVNQ KLIQLGITAS+D GQIGGSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFDF+ D+HSP AIPFLE N                                          GYLIKAMGLITVLPKSMEEFAT+VVNEVGIVRDLKHMA
Subjt:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLED-GRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLES----MKMIIYHHNILR
        +FCEGL+D GRLGLERLGK+LN KRFGMKHNAGSDSLLTASAH EMV+RFGM  +VCNGFLYGFSE+LES    MKM I HHNILR
Subjt:  RFCEGLED-GRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLES----MKMIIYHHNILR

A0A5A7TRF3 Putative CCR4-associated factor 1-like protein 83.4e-8575.44Show/hide
Query:  MKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITV
        MKLIQLGITASND GQIGGSWEFNFSDFDFQVD+HSPSAIPFLEKN                                          GYLIKAMGLIT+
Subjt:  MKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITV

Query:  LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKM--
        LP+SMEEFA LVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRF MT EVCNGFLYGFS+SLESMKM  
Subjt:  LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKM--

Query:  --IIYHHNILRLGQIPHFPYTPSCIISH
           IY HNILRLGQIPHFPYTPSCIISH
Subjt:  --IIYHHNILRLGQIPHFPYTPSCIISH

A0A5A7TRG1 Poly(A)-specific ribonuclease2.4e-13985.91Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFDFQVDSHSPSAIPFLEKN                                          GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
Subjt:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH
        RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH
Subjt:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH

A0A6J1CXP9 Poly(A)-specific ribonuclease5.7e-6447.39Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MG   +  SRR     IR+VW+ NF+ E+   ++CL  + ILTIDTEFPGFI  +P  +I+E++Y +FRFNVN+ KLIQLG+TAS++ G IG +WEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFD Q+D+H+ S++ FL++N                                          GYL+KAMG+   +P+SMEEFA LV   +G V DLKHMA
Subjt:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPH
        +FCEGLEDG+LGLE+L +++N+KRFG KH+AGSDSLLTAS + +M  +F +  EVC+GFLYG    L + K+ +Y +  L  GQIP+
Subjt:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESMKMIIYHHNILRLGQIPH

A0A6J1G7L2 Poly(A)-specific ribonuclease6.1e-6650.74Show/hide
Query:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS
        MG RN+ R RR + P I++VWASNF+ EI + + CL+ + IL+IDTEFPG I  +P  SIDE +Y++ RFNVNQ KLIQLG+TAS++ GQ+ GSWEFNFS
Subjt:  MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFS

Query:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA
        DFD Q+D+ +PS+I FLE+N                                          GYL+KAMG+   LP+SMEEFA +V   VG+VRDLK +A
Subjt:  DFDFQVDSHSPSAIPFLEKN------------------------------------------GYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMA

Query:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESM
        R+CEGLE GR+GLERLG++L +KRFGMKH+AGSDSLLTA  H +M + F +  E  +G LYG    L+ M
Subjt:  RFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSESLESM

SwissProt top hitse value%identityAlignment
O64773 Probable CCR4-associated factor 1 homolog 53.1e-2232.03Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQ-IGGSWEFNFSDFDFQVDSHSPSAIPFL
        +VW  N  +E+    +CL+    + IDTEFPG + ++P D+ DE  Y++ +FNV+   LIQLG+T    FG+ I  +WE N SDF+      +  +I FL
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQ-IGGSWEFNFSDFDFQVDSHSPSAIPFL

Query:  EKNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLER
        + NG                                           YL+K +     LP++ +EF   V   +G  V D+K MA  C GL   R GL+R
Subjt:  EKNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLER

Query:  LGKILNKKRFGMKHNAGSDSLLTASAHFEMV
        +  +L  +R G  H+AGSDS LTA    +++
Subjt:  LGKILNKKRFGMKHNAGSDSLLTASAHFEMV

Q9C6M9 Putative CCR4-associated factor 1 homolog 45.2e-2232.74Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE
        +VW  N   E+    +CL+  + + IDTEFPG + ++P D+ +E  Y++ +FNV+   LIQLG T  +  G I  +WE N SDF+      +  +I FL+
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE

Query:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL
         NG                                           YL+K +     LP++ EEF   V   +G  V D+K +A  C GL   R GL+R+
Subjt:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL

Query:  GKILNKKRFGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKILNKKRFGMKHNAGSDSLLTA

Q9LXM4 Putative CCR4-associated factor 1 homolog 84.7e-2333.94Show/hide
Query:  DECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG-----------
        ++CLR +  + IDTEFP  + ++ + + DEE Y +  F+V++ KLIQLG+T  +  G+IGG+WE NFSDF    D+ +  +I FL +NG           
Subjt:  DECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG-----------

Query:  --------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNA
                                        YL+K       LP + E F+  V   +G V DLK MA  CEGL   RLGLE L       R G  H+A
Subjt:  --------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNA

Query:  GSDSLLTASAHFEMVKRF
        GS++ LTA    +++  F
Subjt:  GSDSLLTASAHFEMVKRF

Q9SFX6 Putative CCR4-associated factor 1 homolog 38.9e-2232.29Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE
        +VW  N   E+    +CL+  + + IDTEFPG + ++P D+ +E  Y++ +FNV+   LIQLG T  +  G    +WE N SDFD      +  +I FL+
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE

Query:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL
         NG                                           YL+K +     LP++ EEF   V   +G  V D+K +A  C GL   + GL+R+
Subjt:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL

Query:  GKILNKKRFGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKILNKKRFGMKHNAGSDSLLTA

Q9SHJ0 Probable CCR4-associated factor 1 homolog 12.3e-3034.65Show/hide
Query:  KPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSA
        +P  R+VW SN + E+ +  ECL+   ++  DTE+PG I ++  DS  +E Y+  + NV   KLIQ G T  N  G+IGG WE NFS+F    D+ +  +
Subjt:  KPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSA

Query:  IPFLEKNGYLIKAM--------------GLITV-----------------------------LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLG
        I FL ++G  ++ +               L+TV                             LP++  EFAT VV   G V D K MA FCEGL +  LG
Subjt:  IPFLEKNGYLIKAM--------------GLITV-----------------------------LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLG

Query:  LERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSES
        L +L ++L   R G  H+AGSDSL+TA   F  +K          G +YG  +S
Subjt:  LERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSES

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-3134.65Show/hide
Query:  KPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSA
        +P  R+VW SN + E+ +  ECL+   ++  DTE+PG I ++  DS  +E Y+  + NV   KLIQ G T  N  G+IGG WE NFS+F    D+ +  +
Subjt:  KPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSA

Query:  IPFLEKNGYLIKAM--------------GLITV-----------------------------LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLG
        I FL ++G  ++ +               L+TV                             LP++  EFAT VV   G V D K MA FCEGL +  LG
Subjt:  IPFLEKNGYLIKAM--------------GLITV-----------------------------LPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLG

Query:  LERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSES
        L +L ++L   R G  H+AGSDSL+TA   F  +K          G +YG  +S
Subjt:  LERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYGFSES

AT1G27820.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.3e-2332.29Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE
        +VW  N   E+    +CL+  + + IDTEFPG + ++P D+ +E  Y++ +FNV+   LIQLG T  +  G    +WE N SDFD      +  +I FL+
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE

Query:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL
         NG                                           YL+K +     LP++ EEF   V   +G  V D+K +A  C GL   + GL+R+
Subjt:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL

Query:  GKILNKKRFGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKILNKKRFGMKHNAGSDSLLTA

AT1G27890.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-2332.74Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE
        +VW  N   E+    +CL+  + + IDTEFPG + ++P D+ +E  Y++ +FNV+   LIQLG T  +  G I  +WE N SDF+      +  +I FL+
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLE

Query:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL
         NG                                           YL+K +     LP++ EEF   V   +G  V D+K +A  C GL   R GL+R+
Subjt:  KNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLERL

Query:  GKILNKKRFGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKILNKKRFGMKHNAGSDSLLTA

AT1G61470.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.2e-2332.03Show/hide
Query:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQ-IGGSWEFNFSDFDFQVDSHSPSAIPFL
        +VW  N  +E+    +CL+    + IDTEFPG + ++P D+ DE  Y++ +FNV+   LIQLG+T    FG+ I  +WE N SDF+      +  +I FL
Subjt:  QVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQ-IGGSWEFNFSDFDFQVDSHSPSAIPFL

Query:  EKNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLER
        + NG                                           YL+K +     LP++ +EF   V   +G  V D+K MA  C GL   R GL+R
Subjt:  EKNG-------------------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVG-IVRDLKHMARFCEGLEDGRLGLER

Query:  LGKILNKKRFGMKHNAGSDSLLTASAHFEMV
        +  +L  +R G  H+AGSDS LTA    +++
Subjt:  LGKILNKKRFGMKHNAGSDSLLTASAHFEMV

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-2433.94Show/hide
Query:  DECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG-----------
        ++CLR +  + IDTEFP  + ++ + + DEE Y +  F+V++ KLIQLG+T  +  G+IGG+WE NFSDF    D+ +  +I FL +NG           
Subjt:  DECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNG-----------

Query:  --------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNA
                                        YL+K       LP + E F+  V   +G V DLK MA  CEGL   RLGLE L       R G  H+A
Subjt:  --------------------------------YLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNA

Query:  GSDSLLTASAHFEMVKRF
        GS++ LTA    +++  F
Subjt:  GSDSLLTASAHFEMVKRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGAAGAAATCAAACTCGATCAAGAAGATCAAAAAAGCCTTTTATTCGGCAAGTTTGGGCTTCCAACTTCAATTCAGAAATAACACAATTTGATGAATGTCTTCG
ATTTCACACAATTCTTACCATCGATACTGAATTCCCTGGCTTTATCATACAATCTCCACGGGATTCCATTGATGAAGAGATTTACAAAAATTTTCGTTTCAACGTAAATC
AAATGAAACTCATTCAACTTGGTATCACTGCTTCAAATGATTTTGGTCAAATTGGCGGTTCATGGGAGTTTAATTTCTCTGATTTCGACTTCCAAGTCGATTCTCATTCT
CCTTCTGCCATTCCGTTTTTAGAAAAGAATGGGTATCTCATCAAAGCAATGGGGTTAATCACAGTGTTGCCAAAATCAATGGAAGAATTTGCAACGTTGGTTGTTAACGA
AGTTGGAATTGTAAGAGATTTGAAGCATATGGCTAGATTCTGTGAAGGACTAGAAGATGGAAGACTTGGACTTGAAAGATTAGGAAAAATATTGAATAAAAAACGATTCG
GAATGAAACATAACGCTGGATCAGATAGTTTGCTTACAGCATCTGCACATTTTGAGATGGTGAAAAGATTCGGAATGACTTATGAAGTTTGTAATGGATTTTTGTATGGT
TTTTCAGAATCGCTTGAATCCATGAAGATGATTATTTATCATCACAACATTCTTAGGTTAGGTCAAATTCCACATTTTCCTTATACACCTTCTTGTATTATTTCCCATTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGAAGAAATCAAACTCGATCAAGAAGATCAAAAAAGCCTTTTATTCGGCAAGTTTGGGCTTCCAACTTCAATTCAGAAATAACACAATTTGATGAATGTCTTCG
ATTTCACACAATTCTTACCATCGATACTGAATTCCCTGGCTTTATCATACAATCTCCACGGGATTCCATTGATGAAGAGATTTACAAAAATTTTCGTTTCAACGTAAATC
AAATGAAACTCATTCAACTTGGTATCACTGCTTCAAATGATTTTGGTCAAATTGGCGGTTCATGGGAGTTTAATTTCTCTGATTTCGACTTCCAAGTCGATTCTCATTCT
CCTTCTGCCATTCCGTTTTTAGAAAAGAATGGGTATCTCATCAAAGCAATGGGGTTAATCACAGTGTTGCCAAAATCAATGGAAGAATTTGCAACGTTGGTTGTTAACGA
AGTTGGAATTGTAAGAGATTTGAAGCATATGGCTAGATTCTGTGAAGGACTAGAAGATGGAAGACTTGGACTTGAAAGATTAGGAAAAATATTGAATAAAAAACGATTCG
GAATGAAACATAACGCTGGATCAGATAGTTTGCTTACAGCATCTGCACATTTTGAGATGGTGAAAAGATTCGGAATGACTTATGAAGTTTGTAATGGATTTTTGTATGGT
TTTTCAGAATCGCTTGAATCCATGAAGATGATTATTTATCATCACAACATTCTTAGGTTAGGTCAAATTCCACATTTTCCTTATACACCTTCTTGTATTATTTCCCATTA
A
Protein sequenceShow/hide protein sequence
MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHS
PSAIPFLEKNGYLIKAMGLITVLPKSMEEFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHFEMVKRFGMTYEVCNGFLYG
FSESLESMKMIIYHHNILRLGQIPHFPYTPSCIISH