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IVF0003297 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003297
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Genome locationchr08:6429308..6435696
RNA-Seq ExpressionIVF0003297
SyntenyIVF0003297
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]1.04e-8291.5Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

KAA0039507.1 hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]9.60e-8293.15Show/hide
Query:  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQ
        S  EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEK +PKRQ
Subjt:  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQ

Query:  PKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS
         KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Subjt:  PKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS

KAA0065297.1 hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]7.65e-8490.85Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPL KNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]1.08e-8393.92Show/hide
Query:  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQ
        S  EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQ
Subjt:  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQ

Query:  PKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        PKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  PKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

TYK22453.1 uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]1.04e-8291.5Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

TrEMBL top hitse value%identityAlignment
A0A5A7TDE0 Uncharacterized protein1.1e-6394.41Show/hide
Query:  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKP
        EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEK +PKRQ KP
Subjt:  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKP

Query:  SKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS
        SKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Subjt:  SKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS

A0A5A7VDY1 Uncharacterized protein1.9e-6590.85Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPL KNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

A0A5A7VIA9 Uncharacterized protein6.6e-6691.5Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

A0A5D3CTS8 Uncharacterized protein3.3e-6595.17Show/hide
Query:  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKP
        EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKP
Subjt:  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKP

Query:  SKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        SKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  SKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

A0A5D3DFX6 Uncharacterized protein6.6e-6691.5Show/hide
Query:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA
        + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA
Subjt:  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKA

Query:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
        +PKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Subjt:  KPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCTCCATAACTTCTTTGAGACAGATGGGGTTGGATGGGTTAAACTCATGGACAATAGACTAAAACCAAGCAAAAACTCCGAGATTCTTCGCGAGTGGGAAAGTGC
AGACGATTTCAAGCACATTGTGGAGTCTGCGTTTCATCCTCTTCCTATTTTCTTCCACTTTCTTCCTATTCCCATTTGGTTTTCCGGTGCCGAAGTGGTAAATCAAAGAC
TTTCGCACAAATGTGAAAGTGAAAAACAATCTCAAGAGCCCTTGGAAAAGAATCCTCCTCCACCAATAAGTTTAGAAATTATTGATGTTGATGTTGATAAAGAGAAAGAG
ATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGCTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGT
GAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAAGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCA
AGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCTCCATAACTTCTTTGAGACAGATGGGGTTGGATGGGTTAAACTCATGGACAATAGACTAAAACCAAGCAAAAACTCCGAGATTCTTCGCGAGTGGGAAAGTGC
AGACGATTTCAAGCACATTGTGGAGTCTGCGTTTCATCCTCTTCCTATTTTCTTCCACTTTCTTCCTATTCCCATTTGGTTTTCCGGTGCCGAAGTGGTAAATCAAAGAC
TTTCGCACAAATGTGAAAGTGAAAAACAATCTCAAGAGCCCTTGGAAAAGAATCCTCCTCCACCAATAAGTTTAGAAATTATTGATGTTGATGTTGATAAAGAGAAAGAG
ATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGCTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGT
GAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAAGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCA
AGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA
Protein sequenceShow/hide protein sequence
MQLHNFFETDGVGWVKLMDNRLKPSKNSEILREWESADDFKHIVESAFHPLPIFFHFLPIPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKE
IEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL