CuGenDBv2

Gene ID	IVF0003355
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr08:27472246..27473286
RNA-Seq Expression	IVF0003355
Synteny	IVF0003355
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041588 - Integrase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]

7.25e-243

93.37

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPY QYVTKLSQ FE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISF+HV +EDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASE DKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+I+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVA S LHILS+PWPFSLWGMDVIGPIDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGHRFILVAIDYF K IEAASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]

1.54e-239

92.22

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Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPY QYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KI F+HV +E+NQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASE DKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+IHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVA SPLHI S+ WPFSLWGMDVIG IDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGH FILVAIDYF K IE ASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

KAA0067952.1 uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa]

1.04e-246

98.26

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Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNELEHGI VVLISPEGK+FPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASETDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVA SPLHILSSPWP SLWGMDVIGPIDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYG
        ASNGHRFILVAIDYFIK IEAASYCNVTKGVVLKFIKKELICRYG
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYG

TYK21789.1 uncharacterized protein E5676_scaffold1721G00450 [Cucumis melo var. makuwa]

1.14e-262

100

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Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH
        KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH

Query:  NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA
        NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA
Subjt:  NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA

Query:  SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
Subjt:  SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]

5.09e-235

92.51

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Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPY QYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISF+HV +EDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASE DKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+IHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVA SPLHI S+ WPFSLWGMDVIG IDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGH FILVAIDYF K IE ASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1X2 Ribonuclease H

3.7e-191

93.37

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPY QYVTKLSQ FE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISF+HV +EDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASE DKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+I+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVA S LHILS+PWPFSLWGMDVIGPIDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGHRFILVAIDYF K IEAASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

A0A5A7TRL7 Ribonuclease H

2.4e-190

92.51

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGL+VACDMSIKKLKVLGDSMLVIHQVKEEWETR AKLVPY QYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISF+HV +EDN+MADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY A E DKRTIR+LAMNFFLSGEV YKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+IHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVA SPLHILS+PWPFSLWGMDVIGPIDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGHRFILVAIDYF K IEAASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

A0A5A7VHZ0 Uncharacterized protein

9.7e-200

98.26

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNELEHGI VVLISPEGK+FPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASETDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVA SPLHILSSPWP SLWGMDVIGPIDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYG
        ASNGHRFILVAIDYFIK IEAASYCNVTKGVVLKFIKKELICRYG
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYG

A0A5D3DEM4 RNase H domain-containing protein

4.1e-206

100

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH
        KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNH

Query:  NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA
        NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA
Subjt:  NMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKA

Query:  SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
Subjt:  SNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

A0A5D3DMD2 Ribonuclease H

2.7e-189

92.51

Show/hide

Query:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        MLFDGASNEL HGI VVLISPEGK+FPLT KLCFECTHNI EYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPY QYVTKLSQNFE
Subjt:  MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN
        KISF+HV +EDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY ASE DKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFNHVLKEDNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPY-ASETDKRTIRRLAMNFFLSGEVLYKRN

Query:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK
        H+MVLLRCVDEEEAKQIMT+IHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVA SPLHI S+ WPFSLWGMDVIG IDPK
Subjt:  HNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP
        ASNGH FILVAIDYF K IE ASYCNVT+GVVLKFIKKELICRYGLP
Subjt:  ASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFIKKELICRYGLP

SwissProt top hits

e value

%identity

Alignment

Q8K259 Gypsy retrotransposon integrase-like protein 1

1.3e-12

27.62

Show/hide

Query:  IKQYIKCREY-PYASETDKRTIRRLAMNFFLSGEVLY----KRNHNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKY
        I  Y +  EY P    +++  IRR A  F    + L+     R  N +++  V EEE K+++   HE   G H +G      ++ SGYYWT++ +D  ++
Subjt:  IKQYIKCREY-PYASETDKRTIRRLAMNFFLSGEVLY----KRNHNMVLLRCVDEEEAKQIMTNIHEGICGTHANGHMMARQILRSGYYWTTMESDCIKY

Query:  ARKCKKCQIYMDKIHVATSP-LHILSSPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFI
           C+ CQ+  + + VA    L ++ +PW  S+  +D++GP    ++  H + ++  D F K +     C+V+   + K I
Subjt:  ARKCKKCQIYMDKIHVATSP-LHILSSPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFIKCIEAASYCNVTKGVVLKFI

Arabidopsis top hits

e value

%identity

Alignment

AT1G24090.1 RNase H family protein

3.7e-10

34.96

Show/hide

Query:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        FDGAS  N    G   VL + +G L     +     T+N  EY A I+GL+ A +   K +KV GDS LV  Q+K +W+     L    +    L     
Subjt:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAV
            +HVL+  N  AD  A LAV
Subjt:  KISFNHVLKEDNQMADALATLAV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

8.0e-13

33.33

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Query:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        FDGAS  N  + G   VL + +  +     +     T+N+ EY A ++GL+ A D   K + VLGDSMLV  QV+  W+T   K+    +   +L  +F+
Subjt:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAV
             H+ +E N  AD  A  A+
Subjt:  KISFNHVLKEDNQMADALATLAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

8.0e-13

33.33

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Query:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        FDGAS  N  + G   VL + +  +     +     T+N+ EY A ++GL+ A D   K + VLGDSMLV  QV+  W+T   K+    +   +L  +F+
Subjt:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLAV
             H+ +E N  AD  A  A+
Subjt:  KISFNHVLKEDNQMADALATLAV

AT5G51080.1 RNase H family protein

4.6e-08

32.79

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Query:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        FDGAS  N    G   VL + +G L     +     T+N  EY   I+GL+ A +    K+KV  DS LV  Q+K +W+     L    +   +LS    
Subjt:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLA
            +HVL+  N  AD  A +A
Subjt:  KISFNHVLKEDNQMADALATLA

AT5G51080.2 RNase H family protein

4.6e-08

32.79

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Query:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE
        FDGAS  N    G   VL + +G L     +     T+N  EY   I+GL+ A +    K+KV  DS LV  Q+K +W+     L    +   +LS    
Subjt:  FDGAS--NELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFE

Query:  KISFNHVLKEDNQMADALATLA
            +HVL+  N  AD  A +A
Subjt:  KISFNHVLKEDNQMADALATLA

Sequences

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CDS sequence

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ATGCTTTTCGATGGTGCCTCAAATGAGCTGGAACATGGGATTAGAGTTGTGCTAATTTCTCCAGAAGGAAAGCTTTTCCCCCTAACGACCAAGTTATGTTTTGAATGCAC
TCACAATATCGTTGAATATGAAGCTTGCATTATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTAGGTGACTCGATGTTAGTGATACATCAAG
TAAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTACCTTACATCCAATACGTTACAAAATTGTCTCAAAATTTTGAGAAGATTTCATTTAACCATGTTCTTAAGGAA
GACAATCAAATGGCGGATGCATTAGCCACACTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTG
CATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATATGCTTCAGAGACTGACAAACGCACAATAAGAAGGT
TGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACAATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAAACATT
CATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACAATGGAATCAGATTGCATAAAATATGCAAG
GAAATGTAAAAAGTGTCAAATTTATATGGATAAGATCCATGTAGCAACATCTCCATTACATATCTTGTCATCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTG
GACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCATTAAATGTATAGAGGCTGCATCTTATTGCAATGTTACAAAGGGAGTT
GTGCTCAAGTTTATAAAGAAAGAGCTTATATGTCGTTATGGTCTCCCATAA

mRNA sequence

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Protein sequence

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MLFDGASNELEHGIRVVLISPEGKLFPLTTKLCFECTHNIVEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYIQYVTKLSQNFEKISFNHVLKE
DNQMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYASETDKRTIRRLAMNFFLSGEVLYKRNHNMVLLRCVDEEEAKQIMTNI
HEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVATSPLHILSSPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFIKCIEAASYCNVTKGV
VLKFIKKELICRYGLP

IVF0003355 (gene) of Melon (IVF77) v1 genome