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IVF0003379 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003379
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr04:24826216..24826482
RNA-Seq ExpressionIVF0003379
SyntenyIVF0003379
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]7.77e-2868.82Show/hide
Query:  MRAASARAQQTARMADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFY------VSQEQCYVG
        M  ASARAQQTARMADARAPDGARREDPRRLWKFLELSM DVKHSDERNAR PDGR+GDPRA    LQ  PD     +      ++  Q Y+G
Subjt:  MRAASARAQQTARMADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFY------VSQEQCYVG
KAA0050129.1 uncharacterized protein E6C27_scaffold675G001490 [Cucumis melo var. makuwa]3.40e-3088.89Show/hide
Query:  ARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
        ARREDPRRLWKFL+LSMTDVKH DERN RAPDGR+GD RARSRPLQTRPDASGTFYV  EQCY
Subjt:  ARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
TYK05161.1 reverse transcriptase [Cucumis melo var. makuwa]3.44e-2580.95Show/hide
Query:  EDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
        E  +RLWKFLELSMTDVK  +ERNA APDGR+GDPRARSRP QTRPDASG+FYV  EQCYVGG
Subjt:  EDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
TYK07503.1 uncharacterized protein E5676_scaffold1702G00200 [Cucumis melo var. makuwa]5.25e-3794.44Show/hide
Query:  MADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
        MADARAPDGAR EDPRRLWKFLELSMTDVKHSDERNARAPDGR+GDPRARSRPLQTRPDASGTFYV  EQCY
Subjt:  MADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
TYK13783.1 putative Polyprotein [Cucumis melo var. makuwa]1.37e-2785Show/hide
Query:  RRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
        RRLWKFLELSMTDVK  +ERNA APDGR+GDPRARSRP QTRPDASG+FYV  EQCYVGG
Subjt:  RRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
TrEMBL top hitse value%identityAlignment
A0A5A7TFP3 Retrotrans_gag domain-containing protein6.4e-2368.82Show/hide
Query:  MRAASARAQQTARMADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFY------VSQEQCYVG
        M  ASARAQQTARMADARAPDGARREDPRRLWKFLELSM DVKHSDERNAR PDGR+GDPRA    LQ  PD     +      ++  Q Y+G
Subjt:  MRAASARAQQTARMADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFY------VSQEQCYVG
A0A5A7U9F3 Uncharacterized protein1.7e-2388.89Show/hide
Query:  ARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
        ARREDPRRLWKFL+LSMTDVKH DERN RAPDGR+GD RARSRPLQTRPDASGTFYV  EQCY
Subjt:  ARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
A0A5D3BZR4 Reverse transcriptase1.7e-2080.95Show/hide
Query:  EDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
        E  +RLWKFLELSMTDVK  +ERNA APDGR+GDPRARSRP QTRPDASG+FYV  EQCYVGG
Subjt:  EDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
A0A5D3C6G5 Reverse transcriptase domain-containing protein1.9e-3094.44Show/hide
Query:  MADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
        MADARAPDGAR EDPRRLWKFLELSMTDVKHSDERNARAPDGR+GDPRARSRPLQTRPDASGTFYV  EQCY
Subjt:  MADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCY
A0A5D3CPG2 Putative Polyprotein7.8e-2185Show/hide
Query:  RRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
        RRLWKFLELSMTDVK  +ERNA APDGR+GDPRARSRP QTRPDASG+FYV  EQCYVGG
Subjt:  RRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCGCGGCATCCGCGCGCGCGCAACAGACAGCGCGCATGGCAGACGCGCGCGCGCCCGACGGCGCGCGCCGGGAAGACCCGAGACGCCTCTGGAAATTTCTGGAACT
TTCGATGACGGACGTCAAGCACAGTGACGAGCGGAACGCGCGCGCGCCTGACGGACGTAACGGCGACCCGCGCGCGCGCTCCAGGCCCCTCCAGACACGCCCAGACGCCT
CTGGAACCTTCTATGTCAGTCAGGAACAGTGCTATGTCGGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCGCGGCATCCGCGCGCGCGCAACAGACAGCGCGCATGGCAGACGCGCGCGCGCCCGACGGCGCGCGCCGGGAAGACCCGAGACGCCTCTGGAAATTTCTGGAACT
TTCGATGACGGACGTCAAGCACAGTGACGAGCGGAACGCGCGCGCGCCTGACGGACGTAACGGCGACCCGCGCGCGCGCTCCAGGCCCCTCCAGACACGCCCAGACGCCT
CTGGAACCTTCTATGTCAGTCAGGAACAGTGCTATGTCGGTGGCTGA
Protein sequenceShow/hide protein sequence
MRAASARAQQTARMADARAPDGARREDPRRLWKFLELSMTDVKHSDERNARAPDGRNGDPRARSRPLQTRPDASGTFYVSQEQCYVGG