CuGenDBv2

Gene ID	IVF0003388
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome location	chr05:20263745..20264035
RNA-Seq Expression	IVF0003388
Synteny	IVF0003388
Gene Ontology terms	GO:0010073 - meristem maintenance (biological process) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

3.54e-54

92.71

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMH HGRG GEH+EYLYYEVPAAVP+QSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

TYK04066.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]

2.53e-63

100

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

4.42e-55

93.75

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYYEVPAAVPEQS+
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]

4.22e-55

92.71

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFG TYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYY+VPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

XP_016900498.1 PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo]

2.34e-55

92.71

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFG TYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYY+VPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLK4 mediator of RNA polymerase II transcription subunit 12-like isoform X1

1.4e-42

92.71

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFG TYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYY+VPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

A0A5A7SUU1 Serine/threonine-protein phosphatase 7 long form-like protein

4.7e-43

93.75

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PS SYMHGHGRG GEH+EYLYYEVPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

A0A5D3C0X8 GATA zinc finger domain-containing protein 10-like isoform X2

4.1e-47

100

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

3.6e-43

93.75

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYYEVPAAVPEQS+
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

1.4e-42

92.71

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Query:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD
        MTQTQTQSEHNYVS VMMMPTFG TYYDSGVGQSSDFGRGYYNSEAGQSS DFGQQYYDLGS+PSSSYMHGHGRG GEH+EYLYY+VPAAVPEQSD
Subjt:  MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCGAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTT
TGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATACATGCATGGTCACGGGC
GTGGTCATGGAGAACATAGTGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATTAG

mRNA sequence

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Protein sequence

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MTQTQTQSEHNYVSRVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSMDFGQQYYDLGSNPSSSYMHGHGRGHGEHSEYLYYEVPAAVPEQSD

IVF0003388 (gene) of Melon (IVF77) v1 genome