CuGenDBv2

Gene ID	IVF0003405
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr03:9911732..9912190
RNA-Seq Expression	IVF0003405
Synteny	IVF0003405
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

6.66e-91

100

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

KAA0038956.1 copia protein [Cucumis melo var. makuwa]

2.32e-92

97.32

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAW+ILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGV R+KKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.19e-95

97.99

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAW+ILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKV LQKLRGDYESLHMKESESV DYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.13e-89

100

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

3.06e-94

96.64

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDA+LNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAW+ILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGV R+KKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

2.1e-77

100

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-75

97.99

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAW+ILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKV LQKLRGDYESLHMKESESV DYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-77

100

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

A0A5A7V8Y7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.3e-76

99.33

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKK QKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-77

100

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILE

Query:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
        NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF
Subjt:  NTYKGVDRVKKVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

4.0e-25

54.35

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA
        MA+NN VPFQVP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ FEK+  AT+A
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGGAGCAACTACTGCATATCAAGCATGGCAAATTTTGGAGAATACGTATAAAGGAGTAGATCGAGTCAAG
AAGGTTCGTCTTCAAAAATTGAGAGGTGATTATGAATCACTACATATGAAGGAGTCTGAATCAGTTTCAGATTATACTTCAAGATTGCTAGCAGTAGTAAATGAAATGAA
AAGATTTGTGAGACAATAA

mRNA sequence

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Protein sequence

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MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQAWQILENTYKGVDRVK
KVRLQKLRGDYESLHMKESESVSDYTSRLLAVVNEMKRFVRQ

IVF0003405 (gene) of Melon (IVF77) v1 genome