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IVF0003493 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003493
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:15998734..15999012
RNA-Seq ExpressionIVF0003493
SyntenyIVF0003493
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]1.15e-3673.68Show/hide
Query:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        M  F +TF DVGSN+PV Y+ FDM DGNEEFPS+YSQGIDMS++DVRASRPS T +GR+   GSKRKR SQQ+GEIEVIHMA+ECTN+QL TIAE
Subjt:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE

KAA0051922.1 retrotransposon protein [Cucumis melo var. makuwa]4.48e-4075.53Show/hide
Query:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        GRF ETFVDVGSNEP GY+GFDMPDGNE+F SVY+QGIDMS++DVRASRP   L+GR+ S   K KRG+QQEGE+EVIHMALECTN+ L TIAE
Subjt:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

KAA0065782.1 retrotransposon protein [Cucumis melo var. makuwa]8.38e-3974.47Show/hide
Query:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        G FAETF DVGSNEP+ YEGFD+PDGN+EFPSVY+QGI+MS++DVRAS+PSR  EGRVGS   KRKRGSQQE E+EVI+MA ECTN+QL  +AE
Subjt:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

KAA0066074.1 retrotransposon protein [Cucumis melo var. makuwa]9.41e-57100Show/hide
Query:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
Subjt:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE

TYK15225.1 retrotransposon protein [Cucumis melo var. makuwa]2.56e-3676.34Show/hide
Query:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR  S   KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Subjt:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

TrEMBL top hitse value%identityAlignment
A0A5A7VFJ2 Retrotransposon protein2.6e-43100Show/hide
Query:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
Subjt:  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE

A0A5A7VKA9 Retrotransposon protein3.7e-2976.34Show/hide
Query:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR  S   KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Subjt:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

A0A5D3BD15 Retrotransposon protein1.9e-3074.47Show/hide
Query:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        G FAETF DVGSNEP+ YEGFD+PDGN+EFPSVY+QGI+MS++DVRAS+PSR  EGRV   GSKRKRGSQQE E+EVI+MA ECTN+QL  +AE
Subjt:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE

A0A5D3CLE8 Retrotransposon protein1.1e-3075.53Show/hide
Query:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        GRF ETFVDVGSNEP GY+GFDMPDGNE+F SVY+QGIDMS++DVRASRP   L+GR+ S   K KRG+QQEGE+EVIHMALECTN+ L TIAE
Subjt:  GRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

A0A5D3CUK6 Retrotransposon protein3.7e-2976.34Show/hide
Query:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE
        RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR  S   KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Subjt:  RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGS---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAATGAACCTGTCGGGTATGAGGGATTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCA
AGGGATCGACATGTCTAAGAAGGATGTACGCGCATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGGATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTG
AAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAATGAACCTGTCGGGTATGAGGGATTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCA
AGGGATCGACATGTCTAAGAAGGATGTACGCGCATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGGATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTG
AAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCGGAGTGA
Protein sequenceShow/hide protein sequence
MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVGSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE