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IVF0003510 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003510
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr01:9275556..9275795
RNA-Seq ExpressionIVF0003510
SyntenyIVF0003510
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032353.1 uncharacterized protein E6C27_scaffold219G002180 [Cucumis melo var. makuwa]1.31e-1766.1Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP
        MK    T+ CNAIESLG DYCEEEV+V+LFS E FF+++D  YIL++VNVV GAR FEP
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP

KAA0038053.1 uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa]7.74e-1359.65Show/hide
Query:  KIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE
        + P D +T +AIESL  DYCEEEV+ +LF++E FFE+ED  YILK+VN+V G R FE
Subjt:  KIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE

KAA0054122.1 uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa]2.87e-1358.62Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE
        MK P +    NAIESLG DYC+EE + +LFS+E FFE+EDP YIL++VNV+ G   FE
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE

KAA0062401.1 reverse transcriptase [Cucumis melo var. makuwa]8.39e-1470.59Show/hide
Query:  TCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP
        T   IESLG DYC+EEVFV+LFS E FFE+ED  YIL++VNVV+GAR FEP
Subjt:  TCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP

TYK25882.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.44e-1562.07Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE
        MK P + + CNAI+SLG DYCEEEV  KLF  E FF++ED  YI K+VNVV G R FE
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE

TrEMBL top hitse value%identityAlignment
A0A5A7U2P4 Integrase catalytic domain-containing protein5.6e-1061.02Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP
        MK P D K  N I+ LG DYCEEEVF KLFS E FFEDE+P  IL++VNVV   R  +P
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP

A0A5A7V9Q0 Reverse transcriptase1.1e-1074.47Show/hide
Query:  IESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP
        IESLG DYC+EEVFV+LFS E FFE+ED  YIL++VNVV+GAR FEP
Subjt:  IESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP

A0A5D3BLR6 Retrovirus-related Pol polyprotein from transposon 17.64.3e-1058.62Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE
        MKI  D +    IESLG DYCEEE + +L+++E FFEDEDP YIL++VNVV G + FE
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE

A0A5D3DQS7 Transposon Ty3-G Gag-Pol polyprotein6.6e-1162.07Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE
        MK P + + CNAI+SLG DYCEEEV  KLF  E FF++ED  YI K+VNVV G R FE
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE

A0A5D3E7G0 Uncharacterized protein1.2e-1266.1Show/hide
Query:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP
        MK    T+ CNAIESLG DYCEEEV+V+LFS E FF+++D  YIL++VNVV GAR FEP
Subjt:  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCCCCTTAGATACTAAAACCTGCAATGCAATAGAATCTCTTGGATTGGATTATTGTGAAGAAGAAGTGTTCGTCAAACTGTTTAGCTCTGAAGCATTTTTTGA
AGATGAGGATCCTGGTTATATATTGAAAAAAGTGAATGTCGTGTTTGGCGCGAGGATATTTGAACCTTGGATTTACAAACCAAATGCGTTAAGAAGACCAAGCCATCAAT
TGAAGAACCATCAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCCCCTTAGATACTAAAACCTGCAATGCAATAGAATCTCTTGGATTGGATTATTGTGAAGAAGAAGTGTTCGTCAAACTGTTTAGCTCTGAAGCATTTTTTGA
AGATGAGGATCCTGGTTATATATTGAAAAAAGTGAATGTCGTGTTTGGCGCGAGGATATTTGAACCTTGGATTTACAAACCAAATGCGTTAAGAAGACCAAGCCATCAAT
TGAAGAACCATCAAAATTAG
Protein sequenceShow/hide protein sequence
MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEPWIYKPNALRRPSHQLKNHQN