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IVF0003537 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003537
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:6957575..6958219
RNA-Seq ExpressionIVF0003537
SyntenyIVF0003537
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.38e-4567.21Show/hide
Query:  MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKT
        MWKKLDELYQ KDLPN  Y+RERFFTFKMD NKSLIENLGEFKKLS+DF++L +KIGDENESFILLN      K+ K    +  G Q+IT   +I  I+T
Subjt:  MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKT

Query:  RELEFNTQRRDKVNTEGLFSKG
        REL+ N+QRRD+ N EGLFSKG
Subjt:  RELEFNTQRRDKVNTEGLFSKG

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]3.60e-4245.66Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        MA  RY IEKFDGK DF   KAKIKA++ QQKT                  KET++ + Y +IILN+  ++LR+++D+ T Y +W KL+E+Y  KDLPN 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEIT
         + RERFFT+K+D+ KSL +NL EFK+LS++F  + + I +ENE+FILLN      K  K +  ++ G + IT
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEIT

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]9.26e-5043.27Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKT--------------FK-KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        M   RY IEKF+ K DF  WKAKIK ++ +QK               FK +KET++++ Y +I+LN+  +VLR+++D+ T Y +W KL+++Y  KDLPN 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKT--------------FK-KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG
         ++RERFFT+KMD  KSL +NL EFK LS+DF  + + IG+ENE+FILLN      K  K  + ++ G + IT   II  +  +ELE    ++D+   EG
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG

Query:  LFSKGKSK
         F KG +K
Subjt:  LFSKGKSK

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]2.63e-4444.15Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        MA  +Y IEKFD K DF   KAKIKA++ QQK                  +KET++++ Y +IILN+  +VLR+++D+ T Y +W KL+E+Y  KD PN 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEF
         ++RERFFT+KMD  KSL +NL EFK+LS++F  + + IG+ENE+FIL N      K  K  + ++   + ITID II  ++ +ELE 
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEF

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]4.49e-5244.81Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQK---------------TFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        MA  RY IEKFD K DF  WK KIK ++ QQK               T  +KET++ +   +I+LN+  NVLR+VI++ T Y +W KL+E+Y  KDL N 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQK---------------TFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG
         ++RERFFT+KMD+ KSL + L EFK+LS++F  +   IG+ENE+FILLN      K +K  + ++ G + IT + II  ++ RELE    ++ +   EG
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG

Query:  LFSKGKSKNNYK
        LFSKGK+KN+ K
Subjt:  LFSKGKSKNNYK

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein5.0e-3137.26Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        M  ++  IEKFDGK DF  WK K+KA++ QQK  K               +KE +  + Y  +ILNL  NVLR+V +++T   +W KLD LY  K L N 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG
        +Y++E+ F FKMDS KSL +NL +FK+++    +++ KI DEN++ I+LN      K  K  S ++ G + +++DD++  +++ +LE   ++R   N EG
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG

Query:  LFSKGKSKNNYK
        L  +G+++   K
Subjt:  LFSKGKSKNNYK

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-3035.85Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        M   ++ IEKFDG  DFT W  +I AI+  QK  K               ++ET++   Y ++I+N+  NVLR+VI++ T +  W+KL  LY+ KDLPN 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG
        ++++E+ F+FK + NK+L ENL EFKKL+        K+G ENE+ IL+N      K+ K  + ++ G + IT++ +I  +K++ELE  T+ +     EG
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG

Query:  LFSKGKSKNNYK
           +      Y+
Subjt:  LFSKGKSKNNYK

A0A5C7GPM1 Uncharacterized protein5.5e-3038.24Show/hide
Query:  RYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMR
        ++ I+KFDG EDF  W+ K+KA++ QQK  K               +K  M      +IILNL  NVLR+V D+ T YG+W KL+ LY  K L N +Y++
Subjt:  RYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMR

Query:  ERFFTFKMDSNKSLIENLGEFKKLSTDFEDLEN--KIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLF
        ER F+FKMD++K L +NL E+KK++ +  +  +  K+ DENE+ ILLN      K  K  + ++ G   +++++ I  +K++ELE   +++D  N E LF
Subjt:  ERFFTFKMDSNKSLIENLGEFKKLSTDFEDLEN--KIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLF

Query:  SKGK
          G+
Subjt:  SKGK

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-946.5e-3172.16Show/hide
Query:  TFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENE
        T ++KETM+N  Y +I+LNL  NVL++VI +ETTYGMWKKL+ELYQ KDLPN  YMRERF T+KMD NKSLIENLGEFKKLS DF +L++KIGDENE
Subjt:  TFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENE

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-945.7e-3567.21Show/hide
Query:  MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKT
        MWKKLDELYQ KDLPN  Y+RERFFTFKMD NKSLIENLGEFKKLS+DF++L +KIGDENESFILLN      K+ K    +  G Q+IT   +I  I+T
Subjt:  MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKT

Query:  RELEFNTQRRDKVNTEGLFSKG
        REL+ N+QRRD+ N EGLFSKG
Subjt:  RELEFNTQRRDKVNTEGLFSKG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1326.13Show/hide
Query:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF-------KKKETMKNSTYV--------SIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC
        M+  +Y + KF+G   F+ W+ +++ ++ QQ          KK +TMK   +         +I L+L  +V+  +ID++T  G+W +L+ LY  K L N 
Subjt:  MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF-------KKKETMKNSTYV--------SIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNC

Query:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG
        +Y++++ +   M    + + +L  F  L T   +L  KI +E+++ +LLN   +        + +  G   I + D+     T  L  N + R K   +G
Subjt:  VYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEG

Query:  --LFSKG------KSKNNYKRN
          L ++G      +S NNY R+
Subjt:  --LFSKG------KSKNNYKRN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTAGCAAGATATAATATTGAGAAGTTTGATGGTAAGGAAGATTTTACGTTTTGGAAAGCAAAGATCAAAGCTATCATTGACCAACAAAAGACATTCAAAAAGAA
AGAAACTATGAAAAATTCAACTTATGTTTCTATAATTCTCAACCTACGTGGCAATGTTCTAAGGAAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTAG
ATGAACTTTATCAGTTCAAAGACTTACCAAACTGTGTATACATGAGGGAAAGGTTCTTTACCTTTAAAATGGATAGCAACAAGTCATTGATAGAAAATCTTGGAGAGTTC
AAAAAGTTATCGACTGATTTCGAGGACTTGGAAAACAAGATTGGTGATGAAAATGAATCATTCATTTTGCTAAACCACTTCCAAATGCATTTAAAGAAGTCAAAATGGCT
CTCAAATATGGAAATTGGAAGCCAAGAAATCACCATCGATGATATTATTCCAGGGATAAAAACCAGAGAACTAGAGTTTAATACACAAAGAAGAGATAAAGTCAATACTG
AAGGATTGTTCTCAAAGGGTAAGAGCAAAAACAACTATAAAAGAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTAGCAAGATATAATATTGAGAAGTTTGATGGTAAGGAAGATTTTACGTTTTGGAAAGCAAAGATCAAAGCTATCATTGACCAACAAAAGACATTCAAAAAGAA
AGAAACTATGAAAAATTCAACTTATGTTTCTATAATTCTCAACCTACGTGGCAATGTTCTAAGGAAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTAG
ATGAACTTTATCAGTTCAAAGACTTACCAAACTGTGTATACATGAGGGAAAGGTTCTTTACCTTTAAAATGGATAGCAACAAGTCATTGATAGAAAATCTTGGAGAGTTC
AAAAAGTTATCGACTGATTTCGAGGACTTGGAAAACAAGATTGGTGATGAAAATGAATCATTCATTTTGCTAAACCACTTCCAAATGCATTTAAAGAAGTCAAAATGGCT
CTCAAATATGGAAATTGGAAGCCAAGAAATCACCATCGATGATATTATTCCAGGGATAAAAACCAGAGAACTAGAGTTTAATACACAAAGAAGAGATAAAGTCAATACTG
AAGGATTGTTCTCAAAGGGTAAGAGCAAAAACAACTATAAAAGAAACTAA
Protein sequenceShow/hide protein sequence
MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEF
KKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLFSKGKSKNNYKRN