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IVF0003539 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003539
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription termination factor like
Genome locationchr04:23719810..23720342
RNA-Seq ExpressionIVF0003539
SyntenyIVF0003539
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0098588 - bounding membrane of organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]1.36e-3376.92Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSS-------VRRGRSDD
        M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSDLPPGGELSPSS       VRR RSDD
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSS-------VRRGRSDD

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]4.84e-3476.92Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSS-------VRRGRSDD
        M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSDLPPGGELSPSS       VRR RSDD
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSS-------VRRGRSDD

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]3.95e-52100Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]2.42e-4384.21Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPS-------SVRRGRSDDGCKL
        MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELSPS       S RR RSDDG +L
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPS-------SVRRGRSDDGCKL

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]6.41e-3978.95Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSP-------SSVRRGRSDDGCKL
        MTPI E+D  EMFV+IAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGE+SP       SS RR  SDDG + 
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSP-------SSVRRGRSDDGCKL

TrEMBL top hitse value%identityAlignment
A0A1S3CFW1 uncharacterized protein LOC1035002818.3e-39100Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

A0A444DLD0 Transmembrane 9 superfamily member4.0e-1760.49Show/hide
Query:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

A0A4S8IZ19 Uncharacterized protein5.3e-1760.49Show/hide
Query:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

A0A5A7UC63 Uncharacterized protein8.3e-39100Show/hide
Query:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
        MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Subjt:  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

M0RJ50 Uncharacterized protein1.5e-1664.86Show/hide
Query:  EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD
        ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SPSS  R  +DD
Subjt:  EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein7.8e-1353.73Show/hide
Query:  MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSSV
        M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GGE+SPS++
Subjt:  MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSSV

AT2G31945.1 unknown protein3.5e-1357.35Show/hide
Query:  GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSS
        G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P G ++SPSS
Subjt:  GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTT
CTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTC
CGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA
mRNA sequenceShow/hide mRNA sequence
CTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTCATCCATCGACTC
AACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGC
TTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTG
GCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAA
TTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGG
Protein sequenceShow/hide protein sequence
MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL