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IVF0003546 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003546
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr03:3835760..3835978
RNA-Seq ExpressionIVF0003546
SyntenyIVF0003546
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035596.1 hypothetical protein E6C27_scaffold285G002700 [Cucumis melo var. makuwa]7.49e-1863.16Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG
        M+VV +FYDA +  S+ ++T EGKKV+F+ EAINELYDLPND EYP Q +I KPT+G
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG

KAA0049901.1 hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa]8.68e-2761.11Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNIE
        +DVV +FYDAK+  +DL+ T E +K+YF+ EAIN+LYDLPND+EYPG  II KPTRG+ +E LK I WP+ E
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNIE

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.26e-2464.79Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI
        MDVVH+FYD KF+ SDLFIT E +K YFN E INELY+ PND EY GQ+I+ K T+GL +EALK++ WP I
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI

TYK05842.1 gag/pol protein [Cucumis melo var. makuwa]8.44e-2463.38Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI
        MDVVH+FYD KF+ SDLFIT + +K YFN E INELY+ PND EY GQ+I+ K T+GL +EALK++ WP I
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI

TYK30940.1 hypothetical protein E5676_scaffold455G001650 [Cucumis melo var. makuwa]2.09e-1860.94Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG-LVREAL
        M+VV +FYDA +  S+ ++T EGKKV+F+ EAINELYDLPND EYP Q +I KPT+G L+ E L
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG-LVREAL

TrEMBL top hitse value%identityAlignment
A0A5A7T079 Uncharacterized protein4.9e-1363.16Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG
        M+VV +FYDA +  S+ ++T EGKKV+F+ EAINELYDLPND EYP Q +I KPT+G
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG

A0A5A7U8H4 Uncharacterized protein2.7e-1961.11Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNIE
        +DVV +FYDAK+  +DL+ T E +K+YF+ EAIN+LYDLPND+EYPG  II KPTRG+ +E LK I WP+ E
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNIE

A0A5A7V6M5 Gag/pol protein7.1e-2064.79Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI
        MDVVH+FYD KF+ SDLFIT E +K YFN E INELY+ PND EY GQ+I+ K T+GL +EALK++ WP I
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI

A0A5D3C3P6 Gag/pol protein2.1e-1963.38Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI
        MDVVH+FYD KF+ SDLFIT + +K YFN E INELY+ PND EY GQ+I+ K T+GL +EALK++ WP I
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNI

A0A5D3E5P6 Uncharacterized protein2.9e-1360.94Show/hide
Query:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG-LVREAL
        M+VV +FYDA +  S+ ++T EGKKV+F+ EAINELYDLPND EYP Q +I KPT+G L+ E L
Subjt:  MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRG-LVREAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTAGTTCATCGATTCTACGACGCAAAGTTTGACCAATCTGATTTGTTCATCACAACAGAAGGGAAAAAAGTTTATTTCAACTTTGAGGCCATTAATGAATTATA
CGACTTGCCCAACGATGTGGAATATCCAGGACAAGATATCATAATAAAACCTACAAGAGGTTTGGTCAGGGAAGCATTGAAGATTATAATGTGGCCAAACATAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTAGTTCATCGATTCTACGACGCAAAGTTTGACCAATCTGATTTGTTCATCACAACAGAAGGGAAAAAAGTTTATTTCAACTTTGAGGCCATTAATGAATTATA
CGACTTGCCCAACGATGTGGAATATCCAGGACAAGATATCATAATAAAACCTACAAGAGGTTTGGTCAGGGAAGCATTGAAGATTATAATGTGGCCAAACATAGAATGA
Protein sequenceShow/hide protein sequence
MDVVHRFYDAKFDQSDLFITTEGKKVYFNFEAINELYDLPNDVEYPGQDIIIKPTRGLVREALKIIMWPNIE