; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0003559 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003559
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr08:25563387..25563560
RNA-Seq ExpressionIVF0003559
SyntenyIVF0003559
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]5.96e-1782.98Show/hide
Query:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGV
        +WVSSPWVS  +KKGRGDEKNGVKVGV +MRRS FVRG ILKKERGV
Subjt:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGV
KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]7.58e-2287.76Show/hide
Query:  VSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKEREGF
        VS+AKKKGRGDEKNGVKVGV VM RSSFVRG +LKK+RGVWVKKEREGF
Subjt:  VSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKEREGF
KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]1.52e-0876.47Show/hide
Query:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSS
        +WVSSPWVS+A+KKGRGDEKNGVKV V V+  SS
Subjt:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSS
KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.35e-1882Show/hide
Query:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWV
        MLWVSSPWVS+ KKKGRGDEKNG KVGV VMRRSSFVR  ILKKE GV +
Subjt:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWV
TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.79e-2181.48Show/hide
Query:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKER
        MLWVSSPWVS+ KKKGRGDEKNG KVGV VMRRSSFVR  ILKKE GVW  KE+
Subjt:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKER
TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein3.0e-1382.98Show/hide
Query:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGV
        +WVSSPWVS  +KKGRGDEKNGVKVGV +MRRS FVRG ILKKERGV
Subjt:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGV
A0A5A7TTV0 Transcription factor bHLH36-like2.4e-1587.76Show/hide
Query:  VSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKEREGF
        VS+AKKKGRGDEKNGVKVGV VM RSSFVRG +LKK+RGVWVKKEREGF
Subjt:  VSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKEREGF
A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X21.8e-0576.47Show/hide
Query:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSS
        +WVSSPWVS+A+KKGRGDEKNGVKV V V+  SS
Subjt:  LWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSS
A0A5A7UFR0 Ty3-gypsy retrotransposon protein6.0e-1480.39Show/hide
Query:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVK
        MLWVSSPWVS+ KKKGRGDEKNG KVGV VMRRSSFVR  ILKKE GV ++
Subjt:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVK
A0A5D3BCV7 Ty3-gypsy retrotransposon protein8.4e-1681.48Show/hide
Query:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKER
        MLWVSSPWVS+ KKKGRGDEKNG KVGV VMRRSSFVR  ILKKE GVW  KE+
Subjt:  MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKER
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGGGTGTCCTCGCCGTGGGTCTCTATTGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTCTCGTTATGCGTCGTTCGTCGTTCGT
GAGGGGAGAGATTTTGAAGAAGGAAAGGGGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGGGTGTCCTCGCCGTGGGTCTCTATTGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTCTCGTTATGCGTCGTTCGTCGTTCGT
GAGGGGAGAGATTTTGAAGAAGGAAAGGGGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
Protein sequenceShow/hide protein sequence
MLWVSSPWVSIAKKKGRGDEKNGVKVGVLVMRRSSFVRGEILKKERGVWVKKEREGF