CuGenDBv2

Gene ID	IVF0003596
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Genome location	chr01:20167747..20168118
RNA-Seq Expression	IVF0003596
Synteny	IVF0003596
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047720.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

2.06e-55

69.92

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCN   TF+RC + +F++FLER +EIFM +F VF D F ECL+NLEEVL+ C+E QLVLNWEKC+FMV E IMLG+KISHAGL+VDP  IDVVS L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PP S++K L+SFL HVGFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

KYP51624.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

2.49e-55

67.48

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNA  TF+RC L IFS+ +ERSIE+FMD+FSVF  SF ECL+NLE VL +C E +L+LNWEK HFMV E I+LGHKISH G++VDP  ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

KYP59984.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

7.97e-55

68.33

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC L IFS+ +E+SIE+FMD+FSVF  SF ECL+NLE VL +C E  L+LNWEKCHFMV E I+LGHKISH G++VDP  ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYR
        PPP NVK ++SFLGHVGFYR
Subjt:  PPPSNVKPLKSFLGHVGFYR

KYP66266.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

5.40e-55

67.48

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC L IFS+ +E+SIE+FMD+FSVF  SF ECL+NLE VL +C E  L+LNWEKCHFMV E I+LGHKISH G++VD   ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

XP_038891742.1 uncharacterized protein LOC120081139 [Benincasa hispida]

2.37e-55

72.5

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC + IFS+FLE+++E+FMDNFS F DSF+ CL NLE VL +CEEM LVLNWEK HFMV E I+LGHK+S AGL+VD V IDV++ L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYR
        PPPSNVK L+SFLGHVGFYR
Subjt:  PPPSNVKPLKSFLGHVGFYR

TrEMBL top hits

e value

%identity

Alignment

A0A151QRK4 Retrovirus-related Pol polyprotein from transposon 17.6

1.4e-44

68.29

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC L IFS+ +E+SIE+FMD+FSVF  SF ECL+NLE VL +C E+ L+LNWEKCHFMV E I+LGHKISH G++VDP  ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

A0A151S593 Retrovirus-related Pol polyprotein from transposon 17.6

9.2e-44

67.48

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC L IFSN +E+SIE+FMD+FSVF  SF ECL+NLE VL +C E  L+LNWEKCHFMV + I+LGHKISH G++VDP  ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP NVK ++SFLGH  FYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

A0A151TH04 Retrovirus-related Pol polyprotein from transposon 17.6

2.0e-43

67.48

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC L IFS+ +E+SIE+FMD+FSVF  SF ECL+NLE VL +C E  L+LNWEKCHFMV E I+LGHKISH G++VD   ++V+  L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

A0A2U1NRI2 Reverse transcriptase

1.9e-44

66.67

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC + IF + +E S+E+FMD+FSVF +SF +CLSNL+++L++CE+  LVLNWEKCHFMVKE I+LGHK+S AGL+VD   +DV+S L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP+NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

A0A2U1PUH1 Reverse transcriptase

1.6e-43

67.48

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGLCNAP TF+RC + IF + LE S+E+FMD+FSVF DSF+ CLSNL+++LE+CE   LVLNWEKCHFMV E I+LGHKIS  G++VD   IDV++ L
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP+NVK ++SFLGH GFYRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

8.9e-20

39.84

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGL NAP TF+RC   I    L +   +++D+  VF  S  E L +L  V EK  +  L L  +KC F+ +E   LGH ++  G+K +P  I+ +   
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        P P+  K +K+FLG  G+YR+FI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.6e-19

36.59

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGL NAP TF+RC   I    L +   +++D+  +F  S  E L++++ V  K  +  L L  +KC F+ KE   LGH ++  G+K +P+ +  + + 
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        P P+  K +++FLG  G+YR+FI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

6.2e-13

33.33

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGL NAP TF R     F +   R + +++D+  +F +S +E   +L+ VLE+ +   L++  +KC F  +E   LG+ I    +         + + 
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        P P  VK  + FLG + +YRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.4e-17

35.77

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        +PFGL NAP  F+R    I    + +   +++D+  VF + +     NL  VL    +  L +N EK HF+  +   LG+ ++  G+K DP  +  +S +
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        PPP++VK LK FLG   +YR+FI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

Q99315 Transposon Ty3-G Gag-Pol polyprotein

6.2e-13

33.33

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Query:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL
        MPFGL NAP TF R     F +   R + +++D+  +F +S +E   +L+ VLE+ +   L++  +KC F  +E   LG+ I    +         + + 
Subjt:  MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNL

Query:  PPPSNVKPLKSFLGHVGFYRRFI
        P P  VK  + FLG + +YRRFI
Subjt:  PPPSNVKPLKSFLGHVGFYRRFI

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.1e-08

36.25

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Query:  LSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHK--ISHAGLKVDPVNIDVVSNLPPPSNVKPLKSFLGHVGFYRRFI
        +++L  VL+  E+ Q   N +KC F   +   LGH+  IS  G+  DP  ++ +   P P N   L+ FLG  G+YRRF+
Subjt:  LSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHK--ISHAGLKVDPVNIDVVSNLPPPSNVKPLKSFLGHVGFYRRFI

Sequences

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CDS sequence

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ATGCCTTTCGGCTTATGCAATGCACCAAGGACATTTCGAAGGTGCAATCTGACTATCTTCTCGAACTTCTTGGAGAGATCAATTGAGATATTCATGGATAACTTTTCAGT
ATTTAGGGATTCTTTCAAAGAATGTCTAAGCAACTTAGAAGAAGTTTTGGAGAAGTGTGAAGAGATGCAACTCGTTTTAAATTGGGAGAAGTGTCACTTTATGGTTAAAG
AAGAAATTATGCTTGGGCATAAGATCTCCCATGCGGGATTGAAAGTGGACCCCGTGAATATTGATGTGGTAAGTAATTTGCCACCGCCTTCAAATGTCAAACCATTAAAG
AGCTTTCTAGGTCATGTTGGATTTTACAGAAGATTCATCTGA

mRNA sequence

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Protein sequence

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MPFGLCNAPRTFRRCNLTIFSNFLERSIEIFMDNFSVFRDSFKECLSNLEEVLEKCEEMQLVLNWEKCHFMVKEEIMLGHKISHAGLKVDPVNIDVVSNLPPPSNVKPLK
SFLGHVGFYRRFI

IVF0003596 (gene) of Melon (IVF77) v1 genome