CuGenDBv2

Gene ID	IVF0003605
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase catalytic domain-containing protein
Genome location	chr12:11337548..11337910
RNA-Seq Expression	IVF0003605
Synteny	IVF0003605
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035430.1 uncharacterized protein E6C27_scaffold285G00490 [Cucumis melo var. makuwa]

1.53e-57

88.89

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Query:  LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
        L +K  ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Subjt:  LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

KAA0038356.1 pol [Cucumis melo var. makuwa]

1.62e-43

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Query:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD
        MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF+
Subjt:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD

Query:  HNATGEARLLQQNELQEWRS
        +N  GEA LLQ NE QE  S
Subjt:  HNATGEARLLQQNELQEWRS

KAA0040818.1 Pol polyprotein [Cucumis melo var. makuwa]

1.13e-36

56.67

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Query:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD
        MAKLLVKYNI H++ T                  KILEKMV    KDWADHL S LWTY   YKTPL MS Y L FGKAC+LP+++EHK L  CKKLNFD
Subjt:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD

Query:  HNATGEARLLQQNELQEWRS
        ++   EA+LLQ +E Q+WRS
Subjt:  HNATGEARLLQQNELQEWRS

TYJ97037.1 pol [Cucumis melo var. makuwa]

4.25e-42

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Query:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD
        MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF+
Subjt:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD

Query:  HNATGEARLLQQNELQEWRS
        +N  GEA LLQ NE QE  S
Subjt:  HNATGEARLLQQNELQEWRS

TYK25722.1 uncharacterized protein E5676_scaffold862G00140 [Cucumis melo var. makuwa]

4.28e-57

92.47

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Query:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
        ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Subjt:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWL5 RT_RNaseH domain-containing protein

1.5e-44

88.89

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Query:  LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
        L +K  ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Subjt:  LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

A0A5A7T814 Pol

3.2e-34

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Query:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD
        MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF+
Subjt:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD

Query:  HNATGEARLLQQNELQEWRS
        +N  GEA LLQ NE QE  S
Subjt:  HNATGEARLLQQNELQEWRS

A0A5A7UE09 Rve domain-containing protein

3.4e-28

68.82

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Query:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
        ++++ + KILEK+VNSS+KD ADHLDS  W Y  AYKTP+ MSPY LVF KA HLPLE EHK L +CKKLNFDHN  GEARLL+ NELQEW S
Subjt:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

A0A5D3BD35 Pol

3.2e-34

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Query:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD
        MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF+
Subjt:  MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFD

Query:  HNATGEARLLQQNELQEWRS
        +N  GEA LLQ NE QE  S
Subjt:  HNATGEARLLQQNELQEWRS

A0A5D3DQB0 RT_RNaseH domain-containing protein

4.5e-44

92.47

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Query:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
        ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Subjt:  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCAAATTGCTCGTGAAGTACAATATAACTCATAAAATAGTTACCAAGATATTGGAGAAAATGGTAAATTCATCCTACAAGGACTGGGCGGATCACCTAGATTCTAT
GTTATGGACATATCATACCGCGTATAAGACACCCCTTGGAATGTCTCCATACGTGTTAGTCTTTGGAAAAGCATGCCATTTACCACTAGAGGTTGAACACAAGGCGTTAA
GAGCATGTAAAAAGTTAAACTTTGATCATAATGCCACAGGTGAGGCTAGGTTACTACAACAGAATGAGCTTCAAGAGTGGCGTTCTTAA

mRNA sequence

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Protein sequence

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MAKLLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

IVF0003605 (gene) of Melon (IVF77) v1 genome