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IVF0003700 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003700
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionWD repeat-containing protein RUP2-like
Genome locationchr12:11437553..11439510
RNA-Seq ExpressionIVF0003700
SyntenyIVF0003700
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR044616 - WD repeat-containing protein RUP1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035439.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]1.06e-2758.1Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQGCTLVAGGSDGILQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKK
        VGHKK
Subjt:  VGHKK
KAA0038490.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]5.14e-2656.6Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKKR
        VGHKKR
Subjt:  VGHKKR
TYK31084.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]1.49e-2856.6Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKKR
        VGHKKR
Subjt:  VGHKKR
XP_004148378.3 LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]8.31e-2552.63Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV----------------------------------------------------SVCWRQVGEQGCTLVAGG
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                                    SVCWRQVGEQ CTLVAGG
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV----------------------------------------------------SVCWRQVGEQGCTLVAGG

Query:  SDGILQVFVGHKKR
        SDG+LQVFVGHKKR
Subjt:  SDGILQVFVGHKKR
XP_022952662.1 WD repeat-containing protein RUP2-like [Cucurbita moschata]6.42e-2151.38Show/hide
Query:  MWKTEEGG----GARVVRTYEGHVNGRSFVGLSV-------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL
        MWK EEGG    GARVVRTYEGHVNGRSFVGLSV                                           SVCWRQVGE  CTLVAGGSDG+L
Subjt:  MWKTEEGG----GARVVRTYEGHVNGRSFVGLSV-------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL

Query:  QVFVGHKKR
        +VFVG KKR
Subjt:  QVFVGHKKR
TrEMBL top hitse value%identityAlignment
A0A0A0LHK2 Ubiquitin ligase protein cop14.7e-2052.63Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV----------------------------------------------------SVCWRQVGEQGCTLVAGG
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                                    SVCWRQVGEQ CTLVAGG
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV----------------------------------------------------SVCWRQVGEQGCTLVAGG

Query:  SDGILQVFVGHKKR
        SDG+LQVFVGHKKR
Subjt:  SDGILQVFVGHKKR
A0A5A7T240 WD repeat-containing protein RUP2-like1.9e-2158.1Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQGCTLVAGGSDGILQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKK
        VGHKK
Subjt:  VGHKK
A0A5A7T553 WD repeat-containing protein RUP2-like5.5e-2156.6Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKKR
        VGHKKR
Subjt:  VGHKKR
A0A5D3E556 WD repeat-containing protein RUP2-like5.5e-2156.6Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF
        MWKTEEGGGARVVRTYEGHVNGRSFVGLSV                                            SVCWRQVGEQ CTLVAGGSDG+LQVF
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV--------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVF

Query:  VGHKKR
        VGHKKR
Subjt:  VGHKKR
A0A6J1GKZ5 WD repeat-containing protein RUP2-like8.2e-1751.38Show/hide
Query:  MWKTEE----GGGARVVRTYEGHVNGRSFVGLSV-------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL
        MWK EE    GGGARVVRTYEGHVNGRSFVGLSV                                           SVCWRQVGE  CTLVAGGSDG+L
Subjt:  MWKTEE----GGGARVVRTYEGHVNGRSFVGLSV-------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL

Query:  QVFVGHKKR
        +VFVG KKR
Subjt:  QVFVGHKKR
SwissProt top hitse value%identityAlignment
Q9FFA7 WD repeat-containing protein RUP22.0e-1239.81Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV-----------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL
        +W  E+G   RV+RTYEGHVN R+FVGLSV                                               SVCWRQ G   CTLVAGGSDG+L
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV-----------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL

Query:  QVFVGHKK
        QV+VG +K
Subjt:  QVFVGHKK
Q9LTJ6 WD repeat-containing protein RUP13.0e-0839.58Show/hide
Query:  GARVVRTYEGHVNGRSFVGLSV----------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVFVG
        G RVVRTY GHVN R+FVGLSV                                              SVC RQV E  CTLVAGGSDG L++F G
Subjt:  GARVVRTYEGHVNGRSFVGLSV----------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVFVG
Arabidopsis top hitse value%identityAlignment
AT5G23730.1 Transducin/WD40 repeat-like superfamily protein1.4e-1339.81Show/hide
Query:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV-----------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL
        +W  E+G   RV+RTYEGHVN R+FVGLSV                                               SVCWRQ G   CTLVAGGSDG+L
Subjt:  MWKTEEGGGARVVRTYEGHVNGRSFVGLSV-----------------------------------------------SVCWRQVGEQGCTLVAGGSDGIL

Query:  QVFVGHKK
        QV+VG +K
Subjt:  QVFVGHKK
AT5G52250.1 Transducin/WD40 repeat-like superfamily protein2.1e-0939.58Show/hide
Query:  GARVVRTYEGHVNGRSFVGLSV----------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVFVG
        G RVVRTY GHVN R+FVGLSV                                              SVC RQV E  CTLVAGGSDG L++F G
Subjt:  GARVVRTYEGHVNGRSFVGLSV----------------------------------------------SVCWRQVGEQGCTLVAGGSDGILQVFVG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTTAGTGTGTGTTGGAGGCAAGT
GGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTTAGTGTGTGTTGGAGGCAAGT
GGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGATAA
Protein sequenceShow/hide protein sequence
MWKTEEGGGARVVRTYEGHVNGRSFVGLSVSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKR