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IVF0003728 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003728
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr11:15009383..15009586
RNA-Seq ExpressionIVF0003728
SyntenyIVF0003728
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047868.1 Integrase, catalytic core [Cucumis melo var. makuwa]8.91e-34100Show/hide
Query:  GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW
        GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW
Subjt:  GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW

KAA0052866.1 uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa]1.67e-1376.6Show/hide
Query:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSE
        HK+RLEEGQE TIQF R+LN TMKEVV+K+IIKWLD R+ YPI DSE
Subjt:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSE

KAA0054795.1 uncharacterized protein E6C27_scaffold437G00800 [Cucumis melo var. makuwa]5.88e-1473.47Show/hide
Query:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKK-IIKWLDTRVTYPIPDSEW
        HKI LEEGQEGTIQF R+LN  MKEVV+K+ IIKWLD  V YPI D+EW
Subjt:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKK-IIKWLDTRVTYPIPDSEW

TYK02154.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.21e-2095.56Show/hide
Query:  MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKK
        MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKE V KK
Subjt:  MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKK

WP_217833196.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.47e-1366Show/hide
Query:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS
        HKIRLEEG++G+++  R+LN  MKEVV+K+IIKWLD  V YPI DS WVS
Subjt:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS

TrEMBL top hitse value%identityAlignment
A0A5A7T4Y2 Uncharacterized protein1.1e-0961.29Show/hide
Query:  EGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS
        E  +L+    P H ++LEEGQE TIQF R LN  MKEVV+K+IIKWLD  V YPI +SEWVS
Subjt:  EGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS

A0A5A7TY39 Integrase, catalytic core1.2e-26100Show/hide
Query:  GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW
        GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW
Subjt:  GNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEW

A0A5A7UF79 Uncharacterized protein1.6e-1076.6Show/hide
Query:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSE
        HK+RLEEGQE TIQF R+LN TMKEVV+K+IIKWLD R+ YPI DSE
Subjt:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSE

A0A5A7UM85 Uncharacterized protein1.4e-0973.47Show/hide
Query:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKK-IIKWLDTRVTYPIPDSEW
        HKI LEEGQEGTIQF R+LN  MKEVV+K+ IIKWLD  V YPI D+EW
Subjt:  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKK-IIKWLDTRVTYPIPDSEW

A0A5D3BSM7 Retrovirus-related Pol polyprotein from transposon 17.65.8e-1695.56Show/hide
Query:  MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKK
        MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKE V KK
Subjt:  MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATATGAAGGTAATAGATTAGACCCCGACGAACATCCAAGGCATAAGATCAGGTTGGAAGAGGGTCAAGAGGGCACCATTCAGTTCCATAGGCAATTGAACCACAC
GATGAAAGAGGTCGTTGAGAAGAAAATTATTAAGTGGCTTGACACGAGAGTAACATATCCAATCCCAGACAGTGAATGGGTTAGCTCATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATATGAAGGTAATAGATTAGACCCCGACGAACATCCAAGGCATAAGATCAGGTTGGAAGAGGGTCAAGAGGGCACCATTCAGTTCCATAGGCAATTGAACCACAC
GATGAAAGAGGTCGTTGAGAAGAAAATTATTAAGTGGCTTGACACGAGAGTAACATATCCAATCCCAGACAGTGAATGGGTTAGCTCATTGTAG
Protein sequenceShow/hide protein sequence
MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVSSL