CuGenDBv2

Gene ID	IVF0003742
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr07:23290201..23292178
RNA-Seq Expression	IVF0003742
Synteny	IVF0003742
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]

9.61e-80

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]

3.92e-79

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVR
        IVA+KELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]

6.53e-78

97.37

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

9.61e-80

99.12

Show/hide

Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0059075.1 retrotransposon protein [Cucumis melo var. makuwa]

9.25e-78

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHV TREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TC56 Retrotransposon protein

3.5e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5A7TRV1 Retrotransposon protein

3.5e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3BCN9 Retrotransposon protein

3.5e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3CWL2 Retrotransposon protein

3.5e-61

98.25

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

A0A5D3DCZ1 Retrotransposon protein

3.5e-61

98.25

Show/hide

Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWND+EKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKC

Query:  IVAEKELFDNWVRN
        IVAEKELFDNWVR+
Subjt:  IVAEKELFDNWVRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAA
TGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGACGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAAT
TGGGTTAGGAATATTTTATGA

mRNA sequence

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Protein sequence

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MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDDEKCIVAEKELFDN
WVRNIL

IVF0003742 (gene) of Melon (IVF77) v1 genome