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IVF0003788 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003788
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr07:4191866..4192204
RNA-Seq ExpressionIVF0003788
SyntenyIVF0003788
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036096.1 reverse transcriptase [Cucumis melo var. makuwa]6.71e-6286.61Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP 
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYQMA

KAA0065444.1 reverse transcriptase [Cucumis melo var. makuwa]2.37e-2351.18Show/hide
Query:  DEASYLGFLLG-RLIPMPLAQSLVVRRSNLNVVQAKIKQWG--------ENENSPVRLSP--LVVPFLDEQIEAGSVQVEIQKVLNEYVDIM-----QRR
        D    + FLL  + IPMPLAQ LVV  SN  VVQAKIKQ          + +N   R  P  + +  +DEQIE G+V VEI+KVLNEYVDI+     +  
Subjt:  DEASYLGFLLG-RLIPMPLAQSLVVRRSNLNVVQAKIKQWG--------ENENSPVRLSP--LVVPFLDEQIEAGSVQVEIQKVLNEYVDIM-----QRR

Query:  PCPCGIDHEIELVPRAKPPAQNAYQMA
        P   GIDH IELVP AKPP +NAY+MA
Subjt:  PCPCGIDHEIELVPRAKPPAQNAYQMA

KAA0066799.1 reverse transcriptase [Cucumis melo var. makuwa]3.43e-5578.57Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDE SYLGF LGR IPMPLAQSLVV+RSN  VVQAKIKQ GEN+ SP RL+PL +PFL EQIE GS+ V+IQ+VLNEYVDIM +RPCP GIDHEIELVP+
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYQMA

KAA0066867.1 reverse transcriptase [Cucumis melo var. makuwa]1.66e-73100Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAYQMA
Subjt:  AKPPAQNAYQMA

TYJ96846.1 reverse transcriptase [Cucumis melo var. makuwa]3.31e-5287.5Show/hide
Query:  MPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA
        MPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP AKPPAQNAY+MA
Subjt:  MPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA

TrEMBL top hitse value%identityAlignment
A0A5A7T1J5 Reverse transcriptase3.1e-4686.61Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP 
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYQMA

A0A5A7VDT8 Reverse transcriptase1.8e-1753.04Show/hide
Query:  RLIPMPLAQSLVVRRSNLNVVQAKIKQWG--------ENENSPVRLSP--LVVPFLDEQIEAGSVQVEIQKVLNEYVDIM-----QRRPCPCGIDHEIEL
        + IPMPLAQ LVV  SN  VVQAKIKQ          + +N   R  P  + +  +DEQIE G+V VEI+KVLNEYVDI+     +  P   GIDH IEL
Subjt:  RLIPMPLAQSLVVRRSNLNVVQAKIKQWG--------ENENSPVRLSP--LVVPFLDEQIEAGSVQVEIQKVLNEYVDIM-----QRRPCPCGIDHEIEL

Query:  VPRAKPPAQNAYQMA
        VP AKPP +NAY+MA
Subjt:  VPRAKPPAQNAYQMA

A0A5A7VIA0 Reverse transcriptase5.6e-56100Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAYQMA
Subjt:  AKPPAQNAYQMA

A0A5A7VNF6 Reverse transcriptase3.9e-4178.57Show/hide
Query:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR
        MDE SYLGF LGR IPMPLAQSLVV+RSN  VVQAKIKQ GEN+ SP RL+PL +PFL EQIE GS+ V+IQ+VLNEYVDIM +RPCP GIDHEIELVP+
Subjt:  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPR

Query:  AKPPAQNAYQMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYQMA

A0A5D3BD02 Reverse transcriptase1.1e-3887.5Show/hide
Query:  MPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA
        MPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP AKPPAQNAY+MA
Subjt:  MPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGGCCTCGTACTTGGGATTTCTTCTTGGAAGATTAATCCCCATGCCATTAGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCTGAATGTGGTTCAAGCTAAGAT
CAAGCAATGGGGTGAGAATGAGAATAGCCCTGTAAGGCTAAGCCCACTGGTTGTCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTTCAAGTAGAGATCCAGAAAG
TTCTGAATGAGTATGTTGATATAATGCAGCGAAGACCTTGCCCATGTGGGATTGATCATGAGATTGAACTTGTCCCAAGAGCCAAACCCCCAGCTCAAAATGCCTACCAA
ATGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGGCCTCGTACTTGGGATTTCTTCTTGGAAGATTAATCCCCATGCCATTAGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCTGAATGTGGTTCAAGCTAAGAT
CAAGCAATGGGGTGAGAATGAGAATAGCCCTGTAAGGCTAAGCCCACTGGTTGTCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTTCAAGTAGAGATCCAGAAAG
TTCTGAATGAGTATGTTGATATAATGCAGCGAAGACCTTGCCCATGTGGGATTGATCATGAGATTGAACTTGTCCCAAGAGCCAAACCCCCAGCTCAAAATGCCTACCAA
ATGGCTTAG
Protein sequenceShow/hide protein sequence
MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDEQIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQ
MA