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IVF0003842 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003842
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like
Genome locationtig00001378:16642..17022
RNA-Seq ExpressionIVF0003842
SyntenyIVF0003842
Gene Ontology termsNA
InterPro domainsIPR011057 - Mss4-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146165.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]3.82e-8896.03Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC+ECGTNLNLNS+HLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKC SCGHLVGY+YDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIKALRITSE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
XP_008448515.1 PREDICTED: uncharacterized protein LOC103490667 [Cucumis melo]1.38e-90100Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIKALRITSET
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
XP_022965337.1 uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]3.40e-8289.68Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQRKRTK+KC SC  LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIK LRI+SE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
XP_023551931.1 uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]8.02e-8188.1Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIY C+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQRKRTK+KC SC  LVGY+YDDGPPLT+SPGQ+H
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIK LRI+SE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
XP_038903300.1 uncharacterized protein LOC120089928 [Benincasa hispida]4.46e-8795.24Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC ECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET+NYWGIQRKRTKLKC SCGHLVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIKALRITSE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
TrEMBL top hitse value%identityAlignment
A0A0A0L4W0 Uncharacterized protein2.7e-6796.03Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC+ECGTNLNLNS+HLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKC SCGHLVGY+YDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIKALRITSE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
A0A1S3BJW2 uncharacterized protein LOC1034906673.8e-69100Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIKALRITSET
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
A0A5B7CDG7 Uncharacterized protein7.7e-6287.3Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC+ECGTNLNL+++HLFPPDFYFEAGNKGTLSFS ID TKF+LEKEDK+RPFFETLNYWGIQRKRTK+ C SCG +VGY+YDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFK KALRI+SET
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
A0A6J1CUL5 uncharacterized protein At4g08330, chloroplastic1.3e-6189.52Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIY C++CG +LNL+S HLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFETLNYWGIQRKRTK+KC +CGHLVGY+YDDGPPLTDSPGQFH
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITS
        FGPSQVIPRAPRYRFKIKALRI S
Subjt:  FGPSQVIPRAPRYRFKIKALRITS
A0A6J1HK24 uncharacterized protein LOC111465232 isoform X29.1e-6389.68Show/hide
Query:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH
        MASIYSC+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQRKRTK+KC SC  LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFH

Query:  FGPSQVIPRAPRYRFKIKALRITSET
        FGPSQVIPRAPRYRFKIK LRI+SE+
Subjt:  FGPSQVIPRAPRYRFKIKALRITSET
SwissProt top hitse value%identityAlignment
Q9STN5 Uncharacterized protein At4g08330, chloroplastic4.0e-0730.08Show/hide
Query:  YSCSECGTNLNLNSSHLFPPDF---YFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF
        YSC  CG  LNL+S++         Y ++   G +SF  ID  +F    E +  P F   + WG+ R RTKL C  C + +G    +  P      Q   
Subjt:  YSCSECGTNLNLNSSHLFPPDF---YFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF

Query:  GPSQVIPRAPRYRFKIKALRITS
          S  I    +Y  +I++L+ +S
Subjt:  GPSQVIPRAPRYRFKIKALRITS
Arabidopsis top hitse value%identityAlignment
AT2G17705.1 unknown protein1.3e-5675.2Show/hide
Query:  ASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF
        ++IY+C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFR EKEDK+ PFFETLNYWGIQRKRTK+KCTSC HL+GYIYDDGPPLT   GQ+ F
Subjt:  ASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF

Query:  GPSQVIPRAPRYRFKIKALRITSET
        GPSQVIPRAPRYRFK KA++++S+T
Subjt:  GPSQVIPRAPRYRFKIKALRITSET
AT4G08330.1 unknown protein2.8e-0830.08Show/hide
Query:  YSCSECGTNLNLNSSHLFPPDF---YFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF
        YSC  CG  LNL+S++         Y ++   G +SF  ID  +F    E +  P F   + WG+ R RTKL C  C + +G    +  P      Q   
Subjt:  YSCSECGTNLNLNSSHLFPPDF---YFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHF

Query:  GPSQVIPRAPRYRFKIKALRITS
          S  I    +Y  +I++L+ +S
Subjt:  GPSQVIPRAPRYRFKIKALRITS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTATTCCTGTTCAGAATGCGGAACAAATCTCAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGAACCCTTTC
GTTTTCATTCATCGACTCCACCAAGTTCCGTCTCGAGAAAGAGGACAAGCTCCGTCCATTCTTCGAGACTCTCAACTATTGGGGAATCCAGCGTAAACGGACCAAGCTCA
AGTGCACCTCCTGTGGGCATCTTGTCGGCTATATTTACGATGATGGTCCTCCTCTTACCGATAGTCCAGGTCAGTTCCACTTCGGACCTAGCCAAGTTATTCCCCGAGCT
CCTAGGTACAGATTCAAGATCAAGGCTCTTCGGATTACCTCAGAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTATTCCTGTTCAGAATGCGGAACAAATCTCAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGAACCCTTTC
GTTTTCATTCATCGACTCCACCAAGTTCCGTCTCGAGAAAGAGGACAAGCTCCGTCCATTCTTCGAGACTCTCAACTATTGGGGAATCCAGCGTAAACGGACCAAGCTCA
AGTGCACCTCCTGTGGGCATCTTGTCGGCTATATTTACGATGATGGTCCTCCTCTTACCGATAGTCCAGGTCAGTTCCACTTCGGACCTAGCCAAGTTATTCCCCGAGCT
CCTAGGTACAGATTCAAGATCAAGGCTCTTCGGATTACCTCAGAGACTTGA
Protein sequenceShow/hide protein sequence
MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHFGPSQVIPRA
PRYRFKIKALRITSET