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IVF0003849 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003849
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 1
Genome locationchr11:24104421..24108242
RNA-Seq ExpressionIVF0003849
SyntenyIVF0003849
Gene Ontology termsGO:0016197 - endosomal transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR009395 - Biogenesis of lysosome-related organelles complex 1 subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463815.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo]1.38e-104100Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

XP_011657181.1 biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Cucumis sativus]5.81e-9793.55Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M+SS GQSRPDLPV PNR KFQS+TERL+ADVGGLE SLLQMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
         TTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

XP_022948128.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata]4.40e-9289.68Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        +TTI RF KQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

XP_023534753.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo]1.26e-9189.68Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        +TTI RF KQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

XP_038900751.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida]3.23e-9490.97Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M SS G SRPDLPV PNRGKFQS+TE L+A+VGGLE SLLQMV+DH YASLKLRENSEKAKKDAIQKAVRVSDLL D VNGGVQ+SFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

TrEMBL top hitse value%identityAlignment
A0A1S3CKJ9 Biogenesis of lysosome-related organelles complex 1 subunit 12.2e-79100Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

A0A5A7V238 Biogenesis of lysosome-related organelles complex 1 subunit 11.6e-6186.67Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIH
        ATTIARFTKQTDQWLAATHALNTAVK  G  +  +  +  +  SI   +H
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIH

A0A6J1D9F5 Biogenesis of lysosome-related organelles complex 1 subunit 11.0e-6382.58Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M S  G SRP LPV  NRG  QS+TERLS++ GGLE SLLQMV DHQ+ASLKLR++SEKAKKDAIQKAVRVSDLLV  VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        A TI+RF KQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

A0A6J1G8I4 Biogenesis of lysosome-related organelles complex 1 subunit 17.2e-7089.68Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        +TTI RF KQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

A0A6J1L4G4 Biogenesis of lysosome-related organelles complex 1 subunit 15.7e-6787.1Show/hide
Query:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL
        M S  GQSR   P   NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKAKKDAIQKA+RVSDLLVD VNGGVQ SFVNQKLIELEIRAL
Subjt:  MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRAL

Query:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        +TTI RF KQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Subjt:  ATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

SwissProt top hitse value%identityAlignment
O22929 Biogenesis of lysosome-related organelles complex 1 subunit 15.7e-4059.85Show/hide
Query:  DTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNT
        + E+   +   LE SLLQ++ D++ +SL+LRE +E+++K+AI+ A R +DLLV  VNGGV+E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+
Subjt:  DTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNT

Query:  AVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        AVKEIGDFENW+KT++FDCK IT AI NI++D
Subjt:  AVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

P78537 Biogenesis of lysosome-related organelles complex 1 subunit 19.5e-1933.57Show/hide
Query:  PPNRGKFQSDTERLSADVGGLE---VSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQT
        P +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++ L    A+F KQT
Subjt:  PPNRGKFQSDTERLSADVGGLE---VSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQT

Query:  DQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ
         QW+      N A+KEIGD ENW ++I+ D ++I TA+  +Y+
Subjt:  DQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ

Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 13.9e-2039.66Show/hide
Query:  LLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTI
        L +++ +HQ    + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++ L T  A+F KQT QW++     N A+KEIGD ENW ++I
Subjt:  LLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTI

Query:  DFDCKSITTAIHNIYQ
        + D + I TA+  +Y+
Subjt:  DFDCKSITTAIHNIYQ

Q2NKW0 Biogenesis of lysosome-related organelles complex 1 subunit 11.6e-1836.21Show/hide
Query:  LLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTI
        L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++ L    A+F KQT QW+      N A+KEIGD ENW ++I
Subjt:  LLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTI

Query:  DFDCKSITTAIHNIYQ
        + D ++I TA+  +Y+
Subjt:  DFDCKSITTAIHNIYQ

Q5R7L8 Biogenesis of lysosome-related organelles complex 1 subunit 19.5e-1933.57Show/hide
Query:  PPNRGKFQSDTERLSADVGGLE---VSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQT
        P +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++ L    A+F KQT
Subjt:  PPNRGKFQSDTERLSADVGGLE---VSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQT

Query:  DQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ
         QW+      N A+KEIGD ENW ++I+ D ++I TA+  +Y+
Subjt:  DQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ

Arabidopsis top hitse value%identityAlignment
AT2G30330.1 GCN5L1 family protein4.1e-4159.85Show/hide
Query:  DTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNT
        + E+   +   LE SLLQ++ D++ +SL+LRE +E+++K+AI+ A R +DLLV  VNGGV+E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+
Subjt:  DTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNT

Query:  AVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
        AVKEIGDFENW+KT++FDCK IT AI NI++D
Subjt:  AVKEIGDFENWIKTIDFDCKSITTAIHNIYQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTTCGTTGGGGCAATCACGGCCGGACCTCCCCGTACCGCCTAATCGCGGCAAGTTTCAATCGGACACGGAGAGATTGAGCGCTGATGTAGGTGGATTGGAAGT
TTCATTGCTTCAGATGGTCAGTGATCATCAGTACGCCTCTCTCAAGCTCAGGGAAAACTCTGAGAAGGCGAAGAAAGATGCCATACAGAAGGCGGTACGCGTTTCGGATC
TTTTAGTCGATACCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGCGACTACGATTGCAAGATTTACGAAGCAA
ACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTAC
GGCCATCCATAACATTTACCAAGACTGA
mRNA sequenceShow/hide mRNA sequence
GGGCGTGGTATGTGAATACACCATGAAATCTTCGTTGGGGCAATCACGGCCGGACCTCCCCGTACCGCCTAATCGCGGCAAGTTTCAATCGGACACGGAGAGATTGAGCG
CTGATGTAGGTGGATTGGAAGTTTCATTGCTTCAGATGGTCAGTGATCATCAGTACGCCTCTCTCAAGCTCAGGGAAAACTCTGAGAAGGCGAAGAAAGATGCCATACAG
AAGGCGGTACGCGTTTCGGATCTTTTAGTCGATACCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGCGACTAC
GATTGCAAGATTTACGAAGCAAACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATT
TTGATTGTAAAAGCATCACTACGGCCATCCATAACATTTACCAAGACTGAAATGCTTGTAGTTAAAGAATCAACCAGAATGTAGTCTGTAGAGTCGAGAAAAAGATAGAT
CCTCATCCTCTGCTTTAAGTTTCTCTGAATCTCTGCCCCCATACATGGTTTGATAAGTTCAAAGGGTGCAGCATGCCCAGATGAAAAGCCTTAGTAGCTTAGAACATGAC
AGTCACCTGGCGTCTGCTACCTCGCTAACTGTATAAATGATTGTTCGACTCTGTTTTTTATGTTCACTGATTTGTTCTTCATTAGCACATCGCATGTTACCATTTTGCCC
ATTTATTGCCTATGTAAACTGCAGTCTTCACTGTGCAACTATGAGCAGCTTCCATGTAATAATAATATCT
Protein sequenceShow/hide protein sequence
MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQ
TDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD