CuGenDBv2

Gene ID	IVF0003870
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Genome location	chr09:725523..726026
RNA-Seq Expression	IVF0003870
Synteny	IVF0003870
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050670.1 gag/pol protein [Cucumis melo var. makuwa]

3.46e-93

97.35

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRT+REPYERWAKANEKARAYILAS SEVLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDAL YIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

KAA0051847.1 gag/pol protein [Cucumis melo var. makuwa]

6.96e-94

96.58

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

KAA0054432.1 gag/pol protein [Cucumis melo var. makuwa]

3.73e-97

98.01

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKAN+KARAYILASLSEVLAKKHESMLTAREIMDSLQEMF QASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNV EMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

TYK07761.1 gag/pol protein [Cucumis melo var. makuwa]

2.56e-97

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA

XP_008464721.1 PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]

6.72e-94

96.58

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.6e-77

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

A0A5A7TU93 Gag/pol protein

6.6e-77

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

A0A5A7TWB9 Gag/pol protein

6.6e-77

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

A0A5D3CPJ6 Gag/pol protein

6.6e-77

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

A0A5D3CSZ6 Gag/pol protein

6.6e-77

100

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Query:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
        MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY
Subjt:  MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGGCTGCTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTAGATTTGTCCTAGTTGAGGAGTGTCC
TCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAACCATATGAGCGTTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTGAAGTAT
TGGCCAAGAAACATGAATCAATGCTCACTGCTCGTGAGATTATGGACTCCTTGCAGGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATT
TATAATGCCCGTATGAATGAGGGAGCCTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCTGTCATCGATGAAGCCAGTCA
GGTTAGCTTTATTTGGAATCTCTGCCAGAGAGTTTCCTGCAATTTAGAAGCAATGCTGTTATGA

mRNA sequence

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Protein sequence

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MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYI
YNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIWNLCQRVSCNLEAMLL

IVF0003870 (gene) of Melon (IVF77) v1 genome