CuGenDBv2

Gene ID	IVF0003883
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Genome location	chr07:18772543..18772827
RNA-Seq Expression	IVF0003883
Synteny	IVF0003883
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037783.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

2.83e-52

94.68

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALH YRTSVR+SIGATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEKWLAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

KAA0038143.1 Pol polyprotein [Cucumis melo var. makuwa]

6.09e-53

93.62

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALHGYRTSVR+S GATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEK LAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

KAA0040171.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

1.01e-59

97.87

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTISYKDWHEMLPFALHGYRTSVRSSIGATP SLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

TYK16439.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

9.24e-60

98.94

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRL+
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

4.62e-52

93.62

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALHGYRTSVR+S GATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEK LAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T474 Retrovirus-related Pol polyprotein from transposon 17.6

1.3e-42

94.68

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALH YRTSVR+SIGATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEKWLAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

A0A5A7T570 Pol polyprotein

1.9e-41

93.62

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALHGYRTSVR+S GATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEK LAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

A0A5A7TES7 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

6.4e-45

97.87

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTISYKDWHEMLPFALHGYRTSVRSSIGATP SLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

A0A5D3D1U3 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

7.5e-46

98.94

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRL+
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

1.9e-41

93.62

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Query:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM
        MTI+YKDWHEMLPFALHGYRTSVR+S GATPFSLVYGMEAVLPLEVEIP LRVLMEAKLDEAEWIR RYEQLNFVEEK LAALNHGQLYQRRLM
Subjt:  MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAATATCATACAAAGATTGGCATGAAATGCTACCGTTTGCACTACATGGATATCGCACGTCAGTTCGTAGTTCAATAGGGGCAACACCATTTTCTTTAGTTTATGG
TATGGAAGCTGTCTTACCTTTAGAAGTTGAGATACCTTTATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGATGCCGTTATGAGCAGTTGAATT
TCGTTGAAGAAAAATGGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGGCTAATGTGA

mRNA sequence

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Protein sequence

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MTISYKDWHEMLPFALHGYRTSVRSSIGATPFSLVYGMEAVLPLEVEIPLLRVLMEAKLDEAEWIRCRYEQLNFVEEKWLAALNHGQLYQRRLM

IVF0003883 (gene) of Melon (IVF77) v1 genome