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IVF0003888 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003888
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:17057789..17057956
RNA-Seq ExpressionIVF0003888
SyntenyIVF0003888
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038315.1 retrotransposon protein [Cucumis melo var. makuwa]8.50e-2687.27Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  EDVDDVDEG+STYATTIASEDI YIETTNEWSQWRDD+ +SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
KAA0049910.1 retrotransposon protein [Cucumis melo var. makuwa]4.37e-29100Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]4.08e-2683.64Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  +D+DDVDEGDS YATT ASEDI+YIETTNEWSQWRD+LA+SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]1.19e-2587.27Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  EDVDD DEGDSTYATT ASEDI YIETTNEWSQWRDDLA+SMFTDWQLRN+
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
TYK14046.1 retrotransposon protein [Cucumis melo var. makuwa]6.41e-2589.09Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  +DVDDVDEGDSTYATTIASEDI+YIETTNEWSQWRD+LA+SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7TAA6 Retrotransposon protein1.0e-1887.27Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  EDVDDVDEG+STYATTIASEDI YIETTNEWSQWRDD+ +SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
A0A5A7TW41 Retrotransposon protein2.7e-1989.09Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  +DVDDVDEGDSTYATTIASEDI+YIETTNEWSQWRD+LA+SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
A0A5A7U3B3 Retrotransposon protein1.3e-1889.09Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  EDVDDVDEGDSTYAT  ASEDI YIETTNEWSQWRDDLA+SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
A0A5A7U3Q8 Retrotransposon protein6.8e-23100Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
A0A5D3CUG9 Retrotransposon protein2.7e-1989.09Show/hide
Query:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
        MT  +DVDDVDEGDSTYATTIASEDI+YIETTNEWSQWRD+LA+SMFTDWQLRNA
Subjt:  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCTTTCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTTACTACATTGAGACAACAAACGAGTGGTCTCA
ATGGCGCGACGACCTAGCCAAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCTTTCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTTACTACATTGAGACAACAAACGAGTGGTCTCA
ATGGCGCGACGACCTAGCCAAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA