CuGenDBv2

Gene ID	IVF0003889
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Genome location	chr12:3652763..3653059
RNA-Seq Expression	IVF0003889
Synteny	IVF0003889
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]

2.72e-56

97.96

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVY ME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

KAA0036953.1 Pol polyprotein [Cucumis melo var. makuwa]

2.05e-54

93.88

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        MTITYKDWHEML FALHGYRTSVRTST AT FSLVY ME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLY KKTNASIQ
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

KAA0038143.1 Pol polyprotein [Cucumis melo var. makuwa]

1.44e-52

94.57

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST ATPFSLVY MEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNHGQLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

KAA0044917.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

3.27e-51

92.39

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST AT FSLVY ME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLA LNHGQLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

1.09e-51

94.57

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST ATPFSLVY MEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNHGQLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1X2 Ribonuclease H

1.3e-45

97.96

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVY ME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

A0A5A7T1Y3 Pol polyprotein

1.2e-41

93.88

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        MTITYKDWHEML FALHGYRTSVRTST AT FSLVY ME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLY KKTNASIQ
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

A0A5A7T570 Pol polyprotein

7.6e-41

94.57

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST ATPFSLVY MEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNHGQLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

A0A5A7T7R4 Ribonuclease H

2.9e-40

94.57

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST ATPFSLVY MEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH QLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

7.6e-41

94.57

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Query:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        MTITYKDWHEMLPFALHGYRTSVRTST ATPFSLVY MEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNHGQLYQ++
Subjt:  MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACGTCAGTTCGTACTTCAACTGAGGCAACACCATTTTCTTTAGTTTATGT
TATGGAAGCTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATT
TCGTTGAAGAAAAAAGGTTAGCAGCATTAAATCATGGGCAACTTTACCAAAAGAAGACTAATGCGAGCATACAATAA

mRNA sequence

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Protein sequence

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MTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYVMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

IVF0003889 (gene) of Melon (IVF77) v1 genome