; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0003892 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003892
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationchr07:3803419..3805406
RNA-Seq ExpressionIVF0003892
SyntenyIVF0003892
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]2.04e-10198.7Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]1.75e-102100Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]1.17e-9189.61Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA ARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]2.20e-8788.31Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]5.85e-10198.05Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQ+NAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+A+PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein2.1e-7798.7Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like3.2e-78100Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding3.2e-78100Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like5.5e-7089.61Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA ARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like1.3e-6687.66Show/hide
Query:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284406.5e-4467.42Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIEIADPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE      F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIEIADPEDFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.6e-4565.44Show/hide
Query:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR
        A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR

Query:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein1.6e-4565.44Show/hide
Query:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR
        A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR

Query:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.6e-4565.44Show/hide
Query:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR
        A A   LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMR

Query:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIEIA-DPEDFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein3.4e-4864.93Show/hide
Query:  AARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        + + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAV
Subjt:  AARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAE
        DKWGR+E+ +P  F VKED N+SL+EYELVNV E
Subjt:  DKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein6.2e-5066.03Show/hide
Query:  GKSPTPASQELQ----QTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG
        G++P P S   +    Q         +KPVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG
Subjt:  GKSPTPASQELQ----QTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG

Query:  TTIILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE
         T+ LRNAKIDMFKGSMRLAVDKWGRIE  +P D  VKEDNNLSLVEYELVNV EE
Subjt:  TTIILRNAKIDMFKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGGCTAGACCTGGCCTGAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAA
ACCCGGTACCAATGGTCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGGCAGACGCGGATCGCTGAGT
GCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGATTGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
GTTTAGAAAAATGTCACAAAAAAAAAAAGCCAAAGAGGAAGAAAGAACAAAGAATGAAGTGAAGAGATGCTATTGCTATATATATAAACGCCACTCTCCTAAATTCTCAC
AATTCACAGCGCCACACACACAAACCTAAATCCATCGAGAAAGAAGACAACTTTCGGTCCATTTTCACGGATTCGGATTCAGCTTTCGCATCAATGGCGACAGGGAAATC
ACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGGCTAGACCTGGCCTGAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAACCCGGTACCAATGGTC
ACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGGCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAA
ACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAG
GCTAGCAGTTGATAAATGGGGCCGCATTGAGATTGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAG
AGGAATGAGAAGGTACTACTGAATGCCAACTTTAAGACAATGGGTTGAGATGGCTGGTCAGTGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTA
TAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATTCCGTCGGTTTGACTTACACAAAGCCATGTTTTGTCGGGTAAAGGTATAA
ATAGGTACTAGTTTGGTACTTGTTATAACTCTGGAAATGTAATAGAGCGTTAACGACGGCAAAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTT
TCAATTTGCTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTGGAC
Protein sequenceShow/hide protein sequence
MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
FKGSMRLAVDKWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE